{"id":157,"date":"2017-04-13T23:26:12","date_gmt":"2017-04-13T23:26:12","guid":{"rendered":"http:\/\/sites.warnercnr.colostate.edu\/gwhite\/?page_id=157"},"modified":"2017-06-19T19:34:48","modified_gmt":"2017-06-19T19:34:48","slug":"mark-program-help-file-contents","status":"publish","type":"page","link":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/mark-program-help-file-contents\/","title":{"rendered":"MARK Program Help File Contents"},"content":{"rendered":"<hr \/>\n<ul>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/getting-started\/\">Getting Started<\/a><\/li>\n<li>Program MARK Overview\n<ul>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/overview\/\">Overview<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/program-mark-background\/\">Background<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/generalized-capture-recapture-band-recovery-analysis-theory\/\">Analysis Theory<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/statistical-theory\/\">Statistical Theory<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/literature-cited\/\">Pertinent Literature<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/relation-to-other-programs\/\">Relation to Other Programs<\/a>\n<ul>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/program-brownie\/\">Program BROWNIE<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/program-capture\/\">Program CAPTURE<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/program-estimate\/\">Program ESTIMATE<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/program-release\/\">Program RELEASE<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li>Design Matrix\n<ul>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/design-matrix\/\">Design Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_default.htm\">Design Matrix Default<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_basics.htm\">Design Matrix Basics<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_functions.htm\">Design Matrix Functions<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_advanced.htm\">Design Matrix Advanced<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_advanced_2.htm\">Design Matrix Advanced 2<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_cell_size.htm\">Design Matrix Cell Size<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_colors.htm\">Design Matrix Colors<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariates.htm\">Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariates_missing_values.htm\">Individual Covariates &#8212; Missing Values<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariate_plot.htm\">Individual Covariate Plot<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariates_and_real_estimates.htm\">Individual Covariates and Real Estimates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_labels.htm\">Label Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pre_defined_models.htm\">Pre-Defined Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_reorder_columns.htm\">Reorder Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_retrieve_columns.htm\">Retrieve Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_scaling_covariates.htm\">Scaling Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/standardize_individual_covariates.htm\">Standardize Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_commands.htm\">Design Matrix Commands<\/a><\/li>\n<li>Design Matrix Commands\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/add_column.htm\">Add Column<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/add_one_column.htm\">Add One Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/add_multiple_columns.htm\">Add Multiple Columns<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/paste_clipboard_design_matrix.htm\">Clipboard, Paste<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_continuous_variable.htm\">Continuous<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/continuous_group_effect.htm\">Continuous Group Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/continuous_occasion_effect.htm\">Continuous Occasion Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_multiple_columns.htm\">Copy Multiple Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_one_column.htm\">Copy One Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_value.htm\">Copy Value<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/delete_one_column.htm\">Delete One Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/delete_multiple_columns.htm\">Delete Multiple Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/discrete_group_effect.htm\">Discrete Group Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/discrete_occasion_effect.htm\">Discrete Occasion Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/identity_design_matrix.htm\">Identity<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/intercept.htm\">Intercept<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/insert_one_column.htm\">Insert One Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/insert_multiple_columns.htm\">Insert Multiple Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_labels.htm\">Label Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/multiply_columns.htm\">Multiply Columns<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/first_column_number.htm\">First Column Number<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/second_column_number.htm\">Second Column Number<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_continuous.htm\">Partial Continuous<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_continuous_group_effect.htm\">Partial Continuous Group Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_continuous_occasion_effect.htm\">Partial Continuous Occasion Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_discrete_group_effect.htm\">Partial Discrete Group Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_discrete_occasion_effect.htm\">Partial Discrete Occasion Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_identity.htm\">Partial Identity<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_intercept.htm\">Partial Intercept<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/paste_clipboard_design_matrix.htm\">Paste Clipboard<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/product_of_columns.htm\">Product of Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_retrieve_columns.htm\">Retrieve Column from another Design Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/rotate_column.htm\">Rotate Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/save_design_matrix.htm\">Save Design Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/zero_columns.htm\">Zero Columns<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/zero_one_column.htm\">Zero One Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/zero_multiple_columns.htm\">Zero Multiple Columns<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/zero_partial_column.htm\">Zero Partial Column<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li>Graphics\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/graphics_window.htm\">Graphics Window<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_plots.htm\">Parameter Plots<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariate_plot.htm\">Individual Covariate Plot<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/residuals_plot.htm\">Residuals Plot<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/initial_values.htm\">New Data Initialization<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/initial_values.htm\">Initial Values<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/clear_time_intervals.htm\">Clear Time Intervals<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/covariate_names.htm\">Covariate Names<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/default_covariate_names.htm\">Default Covariate Names<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/data_type.htm\">Data Type<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/model_structure.htm\">Model Structure<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/data_type_change.htm\">Change Data Type<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/data_type_change.htm\">Data Type Change<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/barker_model.htm\">Barker Model<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/barker_model_parameterizations.htm\">Barker Model Parameterizations<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/robust_design_barker_model.htm\">Robust Design Barker Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/closed_captures_models.htm\">Closed Captures Models<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/closed_captures_with_misidentification.htm\">Closed Captures with Mis-identification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pledger_mixture_models.htm\">Pledger Mixture Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/removal_models.htm\">Removal Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/huggins_models.htm\">Huggins Models<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/density_estimation.htm\">Density Estimation<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/heterogeneity_closed_captures.htm\">Heterogeneity Closed Captures<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/heterogeneity_closed_captures_mh.htm\">Heterogeneity Closed Captures Mh<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/heterogeneity_closed_captures_mtbh.htm\">Heterogeneity Closed Captures Mtbh<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/heterogeneity_open_models.htm\">Heterogeneity Open Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_heterogeneity_models.htm\">Individual Heterogeneity Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/known_fate.htm\">Known Fate<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/link_barker.htm\">Link-Barker<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mark_resight_data_types.htm\">Mark-Resight Data Types<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mark_resight_mixed_logit_normal.htm\">Mark-Resight Mixed Logit-Normal<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mark_resight_poisson_log_normal.htm\">Mark-Resight Poisson Log Normal<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/multi_state_models.htm\">Multi-State Models<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/change_pim_definitions.htm\">Change PIM Definitions<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/multi_state_models_with_live_and_dead_encounters.htm\">Multi-State Models with Live and Dead Encounters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/closed_robust_design_multistate_model.htm\">Closed Robust Design Multi-State Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/nest_survival.htm\">Nest Survival<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/population_rate_of_change.htm\">Population Rate of Change<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/robust_design_model.htm\">Robust Design Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/closed_robust_design_multistate_model.htm\">Closed Robust Design Multi-State Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/open_robust_design_multi_state.htm\">Open Robust-Design Multi-State Model<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/residence_times.htm\">Residence Times<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/robust_design_multi_state_model.htm\">Robust Design Multi-State Model<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/residence_times.htm\">Residence Times<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/robust_design_multi_state_state_uncertainty.htm\">Robust Design Multi-State with State Uncertainty<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/residence_times.htm\">Residence Times<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/duration_times.htm\">Duration Times<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation.htm\">Occupancy Estimation<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_multi_scale.htm\">Occupancy Estimation Multi-scale<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_multiple_states.htm\">Occupancy Estimation Multiple States Single Season<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_robust_design.htm\">Occupancy Estimation Robust Design<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_multiple_states_robust_design.htm\">Occupancy Estimation Multiple States Robust Design Conditional Binomial<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_multiple_states_robust_design_general.htm\">Occupancy Estimation Multiple States Robust Design General<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_royle_nichols.htm\">Occupany Royle\/Nichols<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_royle_counts.htm\">Occupancy Royle Counts<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_two_species.htm\">Occupancy Estimation Two Species<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupany_estimation_robust_design_2_species.htm\">Occupancy Estimation Robust Design 2 Species<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_correlated_detections.htm\">Occupancy Estimation with Correlated Detections<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_relaxed_closure.htm\">Occupancy Estimation with Relaxed Closure<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/recruitment_parameters.htm\">Recruitment Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/popan_model.htm\">POPAN Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/young_survival_marked_adults.htm\">Young Survival from Marked Adults<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/encounter_histories_file.htm\">Encounter Histories File<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/encounter_histories_file_view.htm\">Encounter Histories File View<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/encounter_histories_format.htm\">Encounter Histories Format<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/encounter_occasions.htm\">Encounter Occasions<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/group_names.htm\">Group Names<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/default_group_names.htm\">Default Group Names<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariates.htm\">Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/program_limits.htm\">Limits<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_devices.htm\">Number Devices<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_groups.htm\">Number Groups<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_individual_covariates.htm\">Number Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_states.htm\">Number States<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/time_intervals.htm\">Time Intervals<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/set_time_intervals.htm\">Set Time Intervals<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mixtures.htm\">Number of Mixtures<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/rmark_import.htm\">RMARK Import<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Parameter Index Matrices (PIM)\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_matrices.htm\">Parameter Matrices<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/age_matrix.htm\">Age Matrix<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/maximum_age.htm\">Maximum Age<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/all_different_matrix.htm\">All Different Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/column_modification.htm\">Column Modification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/constant_matrix.htm\">Constant Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_matrix.htm\">Copy Matrix<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/matrix_to_copy_or_exchange.htm\">Matrix to Copy or Exchange<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/matrix_to_copy.htm\">Matrix to Copy<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_pim_to_clipboard.htm\">Copy PIM to Clipboard<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/diagonal_modification.htm\">Diagonal Modification<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/diagonal_number.htm\">Diagonal Number<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/diagonal_start_parameter_value.htm\">Diagonal Start Parameter Value<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/exchange_matrices.htm\">Exchange Matrices<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/matrix_to_exchange.htm\">Matrix to Exchange<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/open_pim.htm\">Open PIM<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_entry_box.htm\">Parameter Entry Box<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/paste_clipboard_pim.htm\">Paste Clipboard into PIM<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pre_defined_models.htm\">Pre-Defined Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pim_chart.htm\">PIM Chart<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pim_decrement.htm\">PIM Decrement<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pim_increment.htm\">PIM Increment<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/renumber_no_overlap.htm\">Renumber No Overlap<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/renumber_overlap.htm\">Renumber Overlap<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/row_modification.htm\">Row Modification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/state_labels.htm\">State Labels<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/state_names.htm\">State Names<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/time_matrix.htm\">Time Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/time_age_matrix.htm\">Time and Age Matrix<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Known Problems\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/known_problems.htm\">Known Problems<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Results Browser Commands\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/results_browser.htm\">Results Browser<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/adjust_number_parameters.htm\">Adjust Number Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/qaicc.htm\">AICc<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/qaicc_weight.htm\">AICc Weight<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/anodev.htm\">ANODEV<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/append_model.htm\">Append Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/append_dbf.htm\">Append DBF<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/beta_parameters.htm\">Beta Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/beta_vc_matrix.htm\">Beta VC Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/bic.htm\">BIC<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/bootstrap_data.htm\">Bootstrap Data<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/bootstrap_gof_procedure.htm\">Bootstrap Goodness-of-fit Procedure<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/change_model_name.htm\">Change Model Name<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/chi_square_probability.htm\">Chi-Square Probability<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/chat.htm\">CHat<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/clear_all_models.htm\">Clear All Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_estimates_clipboard.htm\">Copy Estimates Clipboard<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/data_cloning.htm\">Data Cloning<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/data_type_change.htm\">Data Type Change<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/delete_model.htm\">Delete Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/delta_qaicc.htm\">Delta QAICc<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/derived_parameters.htm\">Derived Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/derived_vc_matrix.htm\">Derived VC Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/deviance.htm\">Deviance<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/estimation_window.htm\">Estimation Window<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/f_statistic.htm\">F Statistic<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/f_denominator_df.htm\">F Denominator DF<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/f_numerator_df.htm\">F Numerator DF<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/f_statistic_value.htm\">F Value<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_notes.htm\">File Notes<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/fletcher_chat.htm\">Fletcher chat<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariate_plot.htm\">Individual Covariate Plot<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/input_data_summary.htm\">Input Data Summary<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/likelihood_ratio_tests.htm\">Likelihood Ratio (LR) Tests<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/median_chat.htm\">Median chat<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/model_averaging.htm\">Model Averaging<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/model_likelihood.htm\">Model Likelihood<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/model_notes.htm\">Model Notes<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters.htm\">Number Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_labels.htm\">Parameter Labels<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_plots.htm\">Parameter Plots<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_plots_add_series.htm\">Parameter Plots Add Series<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_plots_parameter_list.htm\">Parameter Plots Parameter List<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pearson_chisquare_statitic.htm\">Pearson Chi-Squared Statistic<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/profile_likelihood_confidence_intervals.htm\">Profile Likelihood Confidence Intervals<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/qaicc.htm\">QAICc<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/qaicc_weight.htm\">QAICc Weight<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/regeneraterealderivedmodels.htm\">All Different Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/regeneraterealderivedmodels.htm\">ReGenerate Real Derived Model(s)<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/replace_data.htm\">Replace Data<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/rerun_models.htm\">ReRun Model(s)<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/residuals_plot.htm\">Residuals Plot<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/retrieve_current_model.htm\">Retrieve Current Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/retrieve_model_from_file.htm\">Retrieve Model from File<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/results_file.htm\">Results File<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/font_size.htm\">Font Size<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/input_data_listing.htm\">Input Data Listing<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Run Models\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pre_defined_models.htm\">Pre-Defined Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_models.htm\">File Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/run_current_model.htm\">Run Current Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/rerun_models.htm\">ReRun Model(s)<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/save_model_structure.htm\">Run Saved Model Structure<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/save_model_structure.htm\">Save Model Structure<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/set_preferences.htm\">Set Preferences<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_threads.htm\">Number Threads<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/subset_models.htm\">Subset Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/time_stamp.htm\">Time Stamp<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/undelete_model.htm\">Undelete Model<\/a><\/li>\n<li>Variance Components<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/variance_components.htm\">Variance Components<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/variance_components_design_matrix.htm\">Variance Components Design Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/variance_components_parameter_indices.htm\">Variance Components Parameter Indices<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li>Run Window\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/run_window.htm\">Run Window<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_models.htm\">File Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/fix_parameters.htm\">Fix Parameters<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/clear_fixed_parameters.htm\">Clear Fixed Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/entry_box_fixed_parameter.htm\">Entry Box Fixed Parameter<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/function_evaluations.htm\">Function Evaluations<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariates_and_real_estimates.htm\">Individual Covariates and Real Estimates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/identifiable_parameters.htm\">Identifiable Parameters<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters_cjs.htm\">Number Parameters CJS<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters_closed_captures.htm\">Number Parameters Closed Captures<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters_s_f.htm\">Number Parameters S f<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters_s_r.htm\">Number Parameters S r<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/initial_estimates.htm\">Initial Estimates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/link_functions.htm\">Link Functions<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mlogit_link.htm\">MLogit Link<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/list_data.htm\">List Data<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc.htm\">MCMC<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_binary_file.htm\">MCMC Binary File<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_burn_in.htm\">MCMC Burn In<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_design_matrix.htm\">MCMC Design Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_diagnostics.htm\">MCMC Diagnostics<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_hyperdistributions.htm\">MCMC Hyperdistributions<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_prior_distributions.htm\">MCMC Prior Distributions<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_r_code.htm\">MCMC R code<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_random_seed.htm\">MCMC Random Seed<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_samples.htm\">MCMC Samples<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_sas_code.htm\">MCMC SAS code<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_step_size.htm\">MCMC Step Size<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_summary_csv_file.htm\">MCMC Summary CSV File<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_vc_matrix.htm\">MCMC VC Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_tuning.htm\">MCMC Tuning<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_vc_matrix.htm\">MCMC VC Matrix<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/model_name.htm\">Model Name<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/multiple_models.htm\">Multiple Models<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/select_all_models.htm\">Select All Models<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters.htm\">Number Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/optimization_method.htm\">Optimization Method<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/penalty_likelihood.htm\">Penalty on Likelihood Function<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/profile_likelihood_confidence_intervals.htm\">Profile Likelihood Confidence Intervals<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/real_parameter.htm\">Real Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/real_vc_matrix.htm\">Real VC Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/run_current_model.htm\">Run Current Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_models.htm\">Run File Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/multiple_models.htm\">Run Multiple Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/run_title.htm\">Run Title<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/save_model_structure.htm\">Save Model Structure<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/set_number_parameters.htm\">Set Number Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/significant_digits.htm\">Significant Digits<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/standardize_individual_covariates.htm\">Standardize Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/variance_estimation.htm\">Variance Estimation<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Simulation Capabilities\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/bootstrap_data.htm\">Bootstrap Data<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/bootstrap_gof_procedure.htm\">Bootstrap Goodness-of-fit Procedure<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/capture_simulations.htm\">CAPTURE Simulations<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/release_simulations.htm\">RELEASE Simulations<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation.htm\">Simulation<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_beta_values_true_model.htm\">Simulation Beta Values True Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_estimation_model_specification.htm\">Simulation Estimation Model Specification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_individual_covariates.htm\">Simulation Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_model_specification.htm\">Simulation Model Specification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_overdispersion.htm\">Simulation Required Tasks<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_overdispersion.htm\">Simulation of Overdispersion<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_release_numbers.htm\">Simulation Release Numbers<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_required_tasks.htm\">Simulation Required Tasks<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_true_model_specification.htm\">Simulation True Model Specification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_robust_design_models.htm\">Simulation of Robust Design Models<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Miscellaneous\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/laserlst.htm\">LaserLst<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/notepad_window.htm\">NotePad Window<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_view.htm\">File View<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_resize.htm\">File Resize<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_open.htm\">File Open<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_new.htm\">File New<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_dialog_window.htm\">File Dialog Window<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/global_model.htm\">Global Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/help_button.htm\">Help Button<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/optimization_exercise.htm\">Optimization Exercise<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/saturated_model.htm\">Saturated Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/set_preferences.htm\">Set Preferences<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/stability_of_program.htm\">Stability of Program<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/temporary_files.htm\">Temporary Files<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Window Manipulation\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/window_cascade.htm\">Window Cascade<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/window_tile.htm\">Window Tile<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Getting Started Program MARK Overview Overview Background Analysis Theory Statistical Theory Pertinent Literature Relation to Other &hellip;<\/p>\n<p class=\"read-more\"> <a class=\"more-link\" href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/mark-program-help-file-contents\/\"> <span class=\"screen-reader-text\">MARK Program Help File Contents<\/span> Read more \u2192<\/a><\/p>\n","protected":false},"author":117,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-157","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/157","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/users\/117"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/comments?post=157"}],"version-history":[{"count":13,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/157\/revisions"}],"predecessor-version":[{"id":1203,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/157\/revisions\/1203"}],"wp:attachment":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/media?parent=157"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}