{"id":157,"date":"2017-04-13T23:26:12","date_gmt":"2017-04-13T23:26:12","guid":{"rendered":"http:\/\/sites.warnercnr.colostate.edu\/gwhite\/?page_id=157"},"modified":"2017-06-19T19:34:48","modified_gmt":"2017-06-19T19:34:48","slug":"mark-program-help-file-contents","status":"publish","type":"page","link":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/mark-program-help-file-contents\/","title":{"rendered":"MARK Program Help File Contents"},"content":{"rendered":"<hr \/>\n<ul>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/getting-started\/\">Getting Started<\/a><\/li>\n<li>Program MARK Overview\n<ul>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/overview\/\">Overview<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/program-mark-background\/\">Background<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/generalized-capture-recapture-band-recovery-analysis-theory\/\">Analysis Theory<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/statistical-theory\/\">Statistical Theory<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/literature-cited\/\">Pertinent Literature<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/relation-to-other-programs\/\">Relation to Other Programs<\/a>\n<ul>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/program-brownie\/\">Program BROWNIE<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/program-capture\/\">Program CAPTURE<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/program-estimate\/\">Program ESTIMATE<\/a><\/li>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/program-release\/\">Program RELEASE<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li>Design Matrix\n<ul>\n<li><a href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/design-matrix\/\">Design Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_default.htm\">Design Matrix Default<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_basics.htm\">Design Matrix Basics<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_functions.htm\">Design Matrix Functions<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_advanced.htm\">Design Matrix Advanced<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_advanced_2.htm\">Design Matrix Advanced 2<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_cell_size.htm\">Design Matrix Cell Size<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_colors.htm\">Design Matrix Colors<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariates.htm\">Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariates_missing_values.htm\">Individual Covariates &#8212; Missing Values<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariate_plot.htm\">Individual Covariate Plot<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariates_and_real_estimates.htm\">Individual Covariates and Real Estimates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_labels.htm\">Label Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pre_defined_models.htm\">Pre-Defined Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_reorder_columns.htm\">Reorder Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_retrieve_columns.htm\">Retrieve Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_scaling_covariates.htm\">Scaling Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/standardize_individual_covariates.htm\">Standardize Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_commands.htm\">Design Matrix Commands<\/a><\/li>\n<li>Design Matrix Commands\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/add_column.htm\">Add Column<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/add_one_column.htm\">Add One Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/add_multiple_columns.htm\">Add Multiple Columns<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/paste_clipboard_design_matrix.htm\">Clipboard, Paste<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_continuous_variable.htm\">Continuous<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/continuous_group_effect.htm\">Continuous Group Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/continuous_occasion_effect.htm\">Continuous Occasion Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_multiple_columns.htm\">Copy Multiple Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_one_column.htm\">Copy One Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_value.htm\">Copy Value<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/delete_one_column.htm\">Delete One Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/delete_multiple_columns.htm\">Delete Multiple Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/discrete_group_effect.htm\">Discrete Group Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/discrete_occasion_effect.htm\">Discrete Occasion Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/identity_design_matrix.htm\">Identity<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/intercept.htm\">Intercept<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/insert_one_column.htm\">Insert One Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/insert_multiple_columns.htm\">Insert Multiple Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_labels.htm\">Label Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/multiply_columns.htm\">Multiply Columns<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/first_column_number.htm\">First Column Number<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/second_column_number.htm\">Second Column Number<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_continuous.htm\">Partial Continuous<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_continuous_group_effect.htm\">Partial Continuous Group Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_continuous_occasion_effect.htm\">Partial Continuous Occasion Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_discrete_group_effect.htm\">Partial Discrete Group Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_discrete_occasion_effect.htm\">Partial Discrete Occasion Effect<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_identity.htm\">Partial Identity<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/partial_intercept.htm\">Partial Intercept<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/paste_clipboard_design_matrix.htm\">Paste Clipboard<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/product_of_columns.htm\">Product of Columns<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_retrieve_columns.htm\">Retrieve Column from another Design Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/rotate_column.htm\">Rotate Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/save_design_matrix.htm\">Save Design Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/zero_columns.htm\">Zero Columns<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/zero_one_column.htm\">Zero One Column<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/zero_multiple_columns.htm\">Zero Multiple Columns<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/zero_partial_column.htm\">Zero Partial Column<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li>Graphics\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/graphics_window.htm\">Graphics Window<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_plots.htm\">Parameter Plots<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariate_plot.htm\">Individual Covariate Plot<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/residuals_plot.htm\">Residuals Plot<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/initial_values.htm\">New Data Initialization<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/initial_values.htm\">Initial Values<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/clear_time_intervals.htm\">Clear Time Intervals<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/covariate_names.htm\">Covariate Names<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/default_covariate_names.htm\">Default Covariate Names<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/data_type.htm\">Data Type<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/model_structure.htm\">Model Structure<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/data_type_change.htm\">Change Data Type<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/data_type_change.htm\">Data Type Change<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/barker_model.htm\">Barker Model<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/barker_model_parameterizations.htm\">Barker Model Parameterizations<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/robust_design_barker_model.htm\">Robust Design Barker Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/closed_captures_models.htm\">Closed Captures Models<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/closed_captures_with_misidentification.htm\">Closed Captures with Mis-identification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pledger_mixture_models.htm\">Pledger Mixture Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/removal_models.htm\">Removal Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/huggins_models.htm\">Huggins Models<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/density_estimation.htm\">Density Estimation<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/heterogeneity_closed_captures.htm\">Heterogeneity Closed Captures<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/heterogeneity_closed_captures_mh.htm\">Heterogeneity Closed Captures Mh<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/heterogeneity_closed_captures_mtbh.htm\">Heterogeneity Closed Captures Mtbh<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/heterogeneity_open_models.htm\">Heterogeneity Open Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_heterogeneity_models.htm\">Individual Heterogeneity Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/known_fate.htm\">Known Fate<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/link_barker.htm\">Link-Barker<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mark_resight_data_types.htm\">Mark-Resight Data Types<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mark_resight_mixed_logit_normal.htm\">Mark-Resight Mixed Logit-Normal<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mark_resight_poisson_log_normal.htm\">Mark-Resight Poisson Log Normal<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/multi_state_models.htm\">Multi-State Models<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/change_pim_definitions.htm\">Change PIM Definitions<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/multi_state_models_with_live_and_dead_encounters.htm\">Multi-State Models with Live and Dead Encounters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/closed_robust_design_multistate_model.htm\">Closed Robust Design Multi-State Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/nest_survival.htm\">Nest Survival<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/population_rate_of_change.htm\">Population Rate of Change<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/robust_design_model.htm\">Robust Design Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/closed_robust_design_multistate_model.htm\">Closed Robust Design Multi-State Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/open_robust_design_multi_state.htm\">Open Robust-Design Multi-State Model<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/residence_times.htm\">Residence Times<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/robust_design_multi_state_model.htm\">Robust Design Multi-State Model<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/residence_times.htm\">Residence Times<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/robust_design_multi_state_state_uncertainty.htm\">Robust Design Multi-State with State Uncertainty<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/residence_times.htm\">Residence Times<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/duration_times.htm\">Duration Times<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation.htm\">Occupancy Estimation<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_multi_scale.htm\">Occupancy Estimation Multi-scale<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_multiple_states.htm\">Occupancy Estimation Multiple States Single Season<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_robust_design.htm\">Occupancy Estimation Robust Design<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_multiple_states_robust_design.htm\">Occupancy Estimation Multiple States Robust Design Conditional Binomial<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_multiple_states_robust_design_general.htm\">Occupancy Estimation Multiple States Robust Design General<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_royle_nichols.htm\">Occupany Royle\/Nichols<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_royle_counts.htm\">Occupancy Royle Counts<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_estimation_two_species.htm\">Occupancy Estimation Two Species<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupany_estimation_robust_design_2_species.htm\">Occupancy Estimation Robust Design 2 Species<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_correlated_detections.htm\">Occupancy Estimation with Correlated Detections<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/occupancy_relaxed_closure.htm\">Occupancy Estimation with Relaxed Closure<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/recruitment_parameters.htm\">Recruitment Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/popan_model.htm\">POPAN Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/young_survival_marked_adults.htm\">Young Survival from Marked Adults<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/encounter_histories_file.htm\">Encounter Histories File<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/encounter_histories_file_view.htm\">Encounter Histories File View<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/encounter_histories_format.htm\">Encounter Histories Format<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/encounter_occasions.htm\">Encounter Occasions<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/group_names.htm\">Group Names<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/default_group_names.htm\">Default Group Names<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariates.htm\">Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/program_limits.htm\">Limits<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_devices.htm\">Number Devices<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_groups.htm\">Number Groups<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_individual_covariates.htm\">Number Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_states.htm\">Number States<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/time_intervals.htm\">Time Intervals<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/set_time_intervals.htm\">Set Time Intervals<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mixtures.htm\">Number of Mixtures<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/rmark_import.htm\">RMARK Import<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Parameter Index Matrices (PIM)\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_matrices.htm\">Parameter Matrices<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/age_matrix.htm\">Age Matrix<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/maximum_age.htm\">Maximum Age<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/all_different_matrix.htm\">All Different Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/column_modification.htm\">Column Modification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/constant_matrix.htm\">Constant Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_matrix.htm\">Copy Matrix<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/matrix_to_copy_or_exchange.htm\">Matrix to Copy or Exchange<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/matrix_to_copy.htm\">Matrix to Copy<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_pim_to_clipboard.htm\">Copy PIM to Clipboard<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/diagonal_modification.htm\">Diagonal Modification<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/diagonal_number.htm\">Diagonal Number<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/diagonal_start_parameter_value.htm\">Diagonal Start Parameter Value<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/exchange_matrices.htm\">Exchange Matrices<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/matrix_to_exchange.htm\">Matrix to Exchange<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/open_pim.htm\">Open PIM<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_entry_box.htm\">Parameter Entry Box<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/paste_clipboard_pim.htm\">Paste Clipboard into PIM<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pre_defined_models.htm\">Pre-Defined Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pim_chart.htm\">PIM Chart<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pim_decrement.htm\">PIM Decrement<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pim_increment.htm\">PIM Increment<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/renumber_no_overlap.htm\">Renumber No Overlap<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/renumber_overlap.htm\">Renumber Overlap<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/row_modification.htm\">Row Modification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/state_labels.htm\">State Labels<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/state_names.htm\">State Names<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/time_matrix.htm\">Time Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/time_age_matrix.htm\">Time and Age Matrix<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Known Problems\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/known_problems.htm\">Known Problems<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Results Browser Commands\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/results_browser.htm\">Results Browser<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/adjust_number_parameters.htm\">Adjust Number Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/qaicc.htm\">AICc<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/qaicc_weight.htm\">AICc Weight<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/anodev.htm\">ANODEV<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/append_model.htm\">Append Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/append_dbf.htm\">Append DBF<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/beta_parameters.htm\">Beta Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/beta_vc_matrix.htm\">Beta VC Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/bic.htm\">BIC<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/bootstrap_data.htm\">Bootstrap Data<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/bootstrap_gof_procedure.htm\">Bootstrap Goodness-of-fit Procedure<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/change_model_name.htm\">Change Model Name<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/chi_square_probability.htm\">Chi-Square Probability<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/chat.htm\">CHat<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/clear_all_models.htm\">Clear All Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/copy_estimates_clipboard.htm\">Copy Estimates Clipboard<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/data_cloning.htm\">Data Cloning<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/data_type_change.htm\">Data Type Change<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/delete_model.htm\">Delete Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/delta_qaicc.htm\">Delta QAICc<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/derived_parameters.htm\">Derived Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/derived_vc_matrix.htm\">Derived VC Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/deviance.htm\">Deviance<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/estimation_window.htm\">Estimation Window<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/f_statistic.htm\">F Statistic<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/f_denominator_df.htm\">F Denominator DF<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/f_numerator_df.htm\">F Numerator DF<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/f_statistic_value.htm\">F Value<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_notes.htm\">File Notes<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/fletcher_chat.htm\">Fletcher chat<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariate_plot.htm\">Individual Covariate Plot<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/input_data_summary.htm\">Input Data Summary<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/likelihood_ratio_tests.htm\">Likelihood Ratio (LR) Tests<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/median_chat.htm\">Median chat<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/model_averaging.htm\">Model Averaging<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/model_likelihood.htm\">Model Likelihood<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/model_notes.htm\">Model Notes<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters.htm\">Number Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/design_matrix_labels.htm\">Parameter Labels<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_plots.htm\">Parameter Plots<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_plots_add_series.htm\">Parameter Plots Add Series<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/parameter_plots_parameter_list.htm\">Parameter Plots Parameter List<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pearson_chisquare_statitic.htm\">Pearson Chi-Squared Statistic<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/profile_likelihood_confidence_intervals.htm\">Profile Likelihood Confidence Intervals<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/qaicc.htm\">QAICc<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/qaicc_weight.htm\">QAICc Weight<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/regeneraterealderivedmodels.htm\">All Different Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/regeneraterealderivedmodels.htm\">ReGenerate Real Derived Model(s)<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/replace_data.htm\">Replace Data<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/rerun_models.htm\">ReRun Model(s)<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/residuals_plot.htm\">Residuals Plot<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/retrieve_current_model.htm\">Retrieve Current Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/retrieve_model_from_file.htm\">Retrieve Model from File<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/results_file.htm\">Results File<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/font_size.htm\">Font Size<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/input_data_listing.htm\">Input Data Listing<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Run Models\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/pre_defined_models.htm\">Pre-Defined Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_models.htm\">File Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/run_current_model.htm\">Run Current Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/rerun_models.htm\">ReRun Model(s)<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/save_model_structure.htm\">Run Saved Model Structure<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/save_model_structure.htm\">Save Model Structure<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/set_preferences.htm\">Set Preferences<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_threads.htm\">Number Threads<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/subset_models.htm\">Subset Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/time_stamp.htm\">Time Stamp<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/undelete_model.htm\">Undelete Model<\/a><\/li>\n<li>Variance Components<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/variance_components.htm\">Variance Components<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/variance_components_design_matrix.htm\">Variance Components Design Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/variance_components_parameter_indices.htm\">Variance Components Parameter Indices<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li>Run Window\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/run_window.htm\">Run Window<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_models.htm\">File Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/fix_parameters.htm\">Fix Parameters<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/clear_fixed_parameters.htm\">Clear Fixed Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/entry_box_fixed_parameter.htm\">Entry Box Fixed Parameter<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/function_evaluations.htm\">Function Evaluations<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/individual_covariates_and_real_estimates.htm\">Individual Covariates and Real Estimates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/identifiable_parameters.htm\">Identifiable Parameters<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters_cjs.htm\">Number Parameters CJS<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters_closed_captures.htm\">Number Parameters Closed Captures<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters_s_f.htm\">Number Parameters S f<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters_s_r.htm\">Number Parameters S r<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/initial_estimates.htm\">Initial Estimates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/link_functions.htm\">Link Functions<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mlogit_link.htm\">MLogit Link<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/list_data.htm\">List Data<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc.htm\">MCMC<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_binary_file.htm\">MCMC Binary File<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_burn_in.htm\">MCMC Burn In<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_design_matrix.htm\">MCMC Design Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_diagnostics.htm\">MCMC Diagnostics<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_hyperdistributions.htm\">MCMC Hyperdistributions<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_prior_distributions.htm\">MCMC Prior Distributions<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_r_code.htm\">MCMC R code<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_random_seed.htm\">MCMC Random Seed<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_samples.htm\">MCMC Samples<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_sas_code.htm\">MCMC SAS code<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_step_size.htm\">MCMC Step Size<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_summary_csv_file.htm\">MCMC Summary CSV File<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_vc_matrix.htm\">MCMC VC Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_tuning.htm\">MCMC Tuning<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/mcmc_vc_matrix.htm\">MCMC VC Matrix<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/model_name.htm\">Model Name<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/multiple_models.htm\">Multiple Models<\/a>\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/select_all_models.htm\">Select All Models<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/number_parameters.htm\">Number Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/optimization_method.htm\">Optimization Method<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/penalty_likelihood.htm\">Penalty on Likelihood Function<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/profile_likelihood_confidence_intervals.htm\">Profile Likelihood Confidence Intervals<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/real_parameter.htm\">Real Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/real_vc_matrix.htm\">Real VC Matrix<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/run_current_model.htm\">Run Current Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_models.htm\">Run File Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/multiple_models.htm\">Run Multiple Models<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/run_title.htm\">Run Title<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/save_model_structure.htm\">Save Model Structure<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/set_number_parameters.htm\">Set Number Parameters<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/significant_digits.htm\">Significant Digits<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/standardize_individual_covariates.htm\">Standardize Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/variance_estimation.htm\">Variance Estimation<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Simulation Capabilities\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/bootstrap_data.htm\">Bootstrap Data<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/bootstrap_gof_procedure.htm\">Bootstrap Goodness-of-fit Procedure<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/capture_simulations.htm\">CAPTURE Simulations<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/release_simulations.htm\">RELEASE Simulations<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation.htm\">Simulation<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_beta_values_true_model.htm\">Simulation Beta Values True Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_estimation_model_specification.htm\">Simulation Estimation Model Specification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_individual_covariates.htm\">Simulation Individual Covariates<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_model_specification.htm\">Simulation Model Specification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_overdispersion.htm\">Simulation Required Tasks<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_overdispersion.htm\">Simulation of Overdispersion<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_release_numbers.htm\">Simulation Release Numbers<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_required_tasks.htm\">Simulation Required Tasks<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_true_model_specification.htm\">Simulation True Model Specification<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/simulation_robust_design_models.htm\">Simulation of Robust Design Models<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Miscellaneous\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/laserlst.htm\">LaserLst<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/notepad_window.htm\">NotePad Window<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_view.htm\">File View<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_resize.htm\">File Resize<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_open.htm\">File Open<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_new.htm\">File New<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/file_dialog_window.htm\">File Dialog Window<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/global_model.htm\">Global Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/help_button.htm\">Help Button<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/optimization_exercise.htm\">Optimization Exercise<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/saturated_model.htm\">Saturated Model<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/set_preferences.htm\">Set Preferences<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/stability_of_program.htm\">Stability of Program<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/temporary_files.htm\">Temporary Files<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Window Manipulation\n<ul>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/window_cascade.htm\">Window Cascade<\/a><\/li>\n<li><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/window_tile.htm\">Window Tile<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Getting Started Program MARK Overview Overview Background Analysis Theory Statistical Theory Pertinent Literature Relation to Other Programs Program BROWNIE Program CAPTURE Program ESTIMATE Program RELEASE Design Matrix Design Matrix Design Matrix Default Design Matrix Basics Design Matrix Functions Design Matrix &hellip;<\/p>\n<p class=\"read-more\"> <a class=\"more-link\" href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/mark-program-help-file-contents\/\"> <span class=\"screen-reader-text\">MARK Program Help File Contents<\/span> Read More &raquo;<\/a><\/p>\n","protected":false},"author":117,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-157","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/157","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/users\/117"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/comments?post=157"}],"version-history":[{"count":13,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/157\/revisions"}],"predecessor-version":[{"id":1203,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/157\/revisions\/1203"}],"wp:attachment":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/media?parent=157"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}