{"id":216,"date":"2017-04-18T03:00:46","date_gmt":"2017-04-18T03:00:46","guid":{"rendered":"http:\/\/sites.warnercnr.colostate.edu\/gwhite\/?page_id=216"},"modified":"2017-04-18T03:58:26","modified_gmt":"2017-04-18T03:58:26","slug":"literature-cited","status":"publish","type":"page","link":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/literature-cited\/","title":{"rendered":"Literature Cited"},"content":{"rendered":"

Contents<\/a> – Index<\/a><\/span><\/p>\n

\n

Literature Cited<\/b><\/span><\/p>\n

Following are references that provide background information to understanding the methods of Program MARK.<\/span><\/p>\n

Akaike<\/a><\/span>, H. 1985.\u00a0 Prediction and entropy.\u00a0 Pages 1-24 in A. C. Atkinson and S.E.\u00a0 Fienberg, (eds.) A Celebration of Statistics: the ISI Centenary Volume,Springer-Verlag, New York, New York, USA.<\/span><\/p>\n

Alho, J. M.\u00a0 1990.\u00a0 Logistic regression in <\/span>capture-recapture models<\/a><\/span>.\u00a0 Biometrics 46:623-635.<\/span><\/p>\n

Anderson, D. R., K. P. Burnham, and G. C. White.\u00a0 1985.\u00a0 Problems in estimating age-specific survival rates from recovery data of birds ringed as young.\u00a0 Journal of Animal Ecology 54:89-98.<\/span><\/p>\n

Anderson, D. R., G. C. White, and K. P. Burnham.\u00a0 1995.\u00a0 Some specialized risk assessment methodologies for vertebrate populations.\u00a0 Environmental and Ecological Statistics 2:91-115.<\/span><\/p>\n

Anderson, D. R., M. A. Wotawa, and E. A. Rexstad.\u00a0 1993.\u00a0 Trends in the analysis of recovery and recapture data.\u00a0 Pages 373-389 in J.-D.\u00a0 Lebreton and P. M. North (eds.) Marked Individuals in the Study of Bird Populations. Birkhauser Verlag, Berlin.\u00a0 397pp.<\/span><\/p>\n

Anderson, D. R., K. P. Burnham, and G. C. White.\u00a0 1994.\u00a0 AIC model selection in overdispersed capture-recapture data.\u00a0 Ecology 75:1780-1793.<\/span><\/p>\n

Anonymous.\u00a0 1990.\u00a0 Ringing, migration and monitoring.\u00a0 The Ring 13(1-2), 314pp.<\/span><\/p>\n

Arnason, A. N., and C. J. Schwarz.\u00a0 1995.\u00a0 <\/span>POPAN<\/a><\/span>-4: enhancements to a system for the analysis of mark-recapture data from open populations.\u00a0 Journal of Applied Statistics 22:785-800.<\/span><\/p>\n

Barker, R. J. 1997.\u00a0 <\/span>Joint modeling of live-recapture, tag-resight, and tag-recovery data<\/a><\/span>.\u00a0 Biometrics 53:666-677.<\/span><\/p>\n

Barker, R. J. 1999. Joint analysis of mark-recapture, resighting and ring-recovery data with age-dependence and marking-effect.\u00a0 Bird Study 46 Supplement:82-91.<\/span><\/p>\n

Barker, R. J., and G. C. White.\u00a0 2001.\u00a0 Joint analysis of live and dead encounters of marked animals.\u00a0 Pages 361-367 in R. Field, R. J. Warren, H. Okarma, and P. R. Sievert, editors.\u00a0 Wildlife, land, and people: priorities for the 21st century.\u00a0 Proceedings of the Second International Wildlife Management Congress.\u00a0 The Wildlife Society, Bethesda, Maryland, USA.<\/span><\/p>\n

Barker, R. J., G. C. White, and M. McDougal.\u00a0 2005.\u00a0 Movement of paradise shelduck between molt sites: a joint <\/span>multistate-dead recovery mark recapture model<\/a><\/span>.\u00a0 Journal of Wildlife Management 69:1194-1201.<\/span><\/p>\n

Bartmann, R. M., G. C. White, L. H. Carpenter, and R. A. Garrott. 1987.\u00a0 Aerial mark-recapture estimates of confined mule deer in pinyon-juniper woodland.\u00a0 Journal of Wildlife Management 51:41-46.\u00a0\u00a0<\/span><\/p>\n

Blondel, J., A. Gosler, J-D.\u00a0 Lebreton, and R. McCleery.\u00a0 (eds.) 1990.\u00a0 Population biology of passerine birds: an integrated approach.\u00a0 Springer-Verlag, Berlin.\u00a0 496pp.<\/span><\/p>\n

Bowden, D. C., and R. C. Kufeld.\u00a0 1995. Generalized mark-sight population size estimation applied to Colorado moose.\u00a0 Journal of Wildlife Management 59:840-851.<\/span><\/p>\n

Brownie, C., D. R. Anderson, K. P. Burnham, and D. S. Robson.\u00a0 1978.\u00a0 Statistical inference from band recovery data a handbook.\u00a0 U. S. Fish and Wildlife Service, Resource Publication 131.\u00a0 Washington, D. C., USA.\u00a0 212pp.<\/span><\/p>\n

Brownie, C., D. R. Anderson, K. P. Burnham, and D. S. Robson.\u00a0 1985.\u00a0 Statistical inference from band recovery data a handbook.\u00a0 2 Ed.\u00a0 U. S. Fish and Wildlife Service, Resource Publication 156.\u00a0 Washington, D. C., USA.\u00a0 305pp.<\/span><\/p>\n

Brownie, C., J. E. Hines, J. D. Nichols, K. H. Pollock, and J. B. Hestbeck.\u00a0 1993. <\/span>Capture-recapture studies for multiple strata<\/a><\/span> including non-Markovian\u00a0 transitions.\u00a0 Biometrics 49:1173-1187.<\/span><\/p>\n

Buckland, S. T., K. P. Burnham, and N. H. Augustin.\u00a0 1997.\u00a0 Model selection: an integral part of inference.\u00a0 Biometrics 53:603-618.<\/span><\/p>\n

Burnham, K. P.\u00a0 1991.\u00a0 On a unified theory for release-resampling of animal populations.\u00a0 in Proceedings of the 1990 Taipei Symposium in Statistics, M.\u00a0 T. Chao and P. E. Cheng (eds.) Institute of Statistical Science, Academia Sinica. Taipei, Taiwan, R. O. C.<\/span><\/p>\n

Burnham, K. P.\u00a0 1993.\u00a0 A theory for combined analysis of ring recovery and recapture data.\u00a0 Pages 199-213 in J.-D.\u00a0 Lebreton and P. M. North, editors.\u00a0 Marked individuals in the study of bird population.\u00a0 Birkhauser Verlag, Basel, Switzerland.<\/span><\/p>\n

Burnham, K. P., and D. R. Anderson.\u00a0 1992.\u00a0 Data-based selection of an appropriate biological model: the key to modern data analysis.\u00a0 Pages 16-30 in Wildlife 2001: Populations, McCullough, D. R., and R. H. Barrett (eds.) Elsevier Applied Science, New York, New York, USA.<\/span><\/p>\n

Burnham, K. P., and D. R. Anderson.\u00a0 1998.\u00a0 Model selection and inference: a practical information-theoretic approach.\u00a0 Springer-Verlag, New York, New York, USA.\u00a0 353 pp.<\/span><\/p>\n

Burnham, K. P., and D. R. Anderson.\u00a0 2002.\u00a0 Model selection and multimodel inference: a practical information-theoretic approach. 2nd Edition. Springer-Verlag, New York, New York, USA.\u00a0 488 pp.<\/span><\/p>\n

Burnham, K. P., D. R. Anderson, G. C. White, C. Brownie, and K. H. Pollock.\u00a0 1987.\u00a0 Design and analysis methods for fish survival experiments based on release-recapture.\u00a0 American Fisheries Society Monograph No.\u00a0 5.\u00a0 Bethesda, Maryland, USA.\u00a0 437pp.<\/span><\/p>\n

Burnham, K. P. D. R. Anderson, and G. C. White.\u00a0 1994.\u00a0 Evaluation of the Kullback-Leibler discrepancy for model selection in open population capture-recapture models.\u00a0 Biometrical Journal 36: 299-315.<\/span><\/p>\n

Burnham, K. P. and G. C. White.\u00a0 2002.\u00a0 Evaluation of some <\/span>random effects methodology<\/a><\/span> applicable to bird ringing data.\u00a0 Journal of Applied Statistics 29(1-4):245-264.<\/span><\/p>\n

Catchpole, E. A., S. N. Freeman, and B. J. T. Morgan.\u00a0 1995.\u00a0 Modeling age variation in survival and reporting rates for recovery models.\u00a0 Journal of Applied Statistics 22:597-609.<\/span><\/p>\n

Chao, A.\u00a0 1988.\u00a0 Estimating animal abundance with capture frequency data.\u00a0 Journal of Wildlife Management 52:295-300.<\/span><\/p>\n

Chao, A.\u00a0 1989.\u00a0 Estimating population size for sparse data in capture-recapture experiments.\u00a0 Biometrics 45:427-438.<\/span><\/p>\n

Chambert, T., W. L. Kendall, J. E. Hines, J. D. Nichols, P. Pedrin, J. H. Waddle, G. Tavecchia, S. C. Walls, and S. Tenan.\u00a0 2015.\u00a0 <\/span>Testing hypotheses on distribtuion shifts and changes in phenology of imperfectly detectable species<\/a><\/span>.\u00a0 Methods in Ecology and Evolution 6:638-647.<\/span><\/p>\n

Conroy, Michael J., Costanzo, Gary R., and Stotts, Daniel B.\u00a0 1989.\u00a0 Winter <\/span>survival<\/a><\/span> of female American black ducks on the Atlantic coast.\u00a0 Journal of Wildlife Management 53:99-109.<\/span><\/p>\n

Cormack, R. M.\u00a0 1964.\u00a0 Estimates of survival from the sighting of marked animals.\u00a0 Biometrika 51:429-438.<\/span><\/p>\n

Cormack, R. M.\u00a0 1992.\u00a0 Interval estimation for mark-recapture studies of closed populations.\u00a0 Biometrics 48:567-576.<\/span><\/p>\n

Cox, D. R., and E. J. Snell.\u00a0 1989.\u00a0 Analysis of binary data.\u00a0 2 Ed.\u00a0 Chapman and Hall, New York, New York, USA.\u00a0 236pp.<\/span><\/p>\n

Dinsmore, S. J., G. C. White, and F. L. Knopf.\u00a0 2002.\u00a0 Advanced techniques for modeling <\/span>avian nest survival<\/a><\/span>.\u00a0 Ecology 83:3476-3488.<\/span><\/p>\n

Dongarra, J. J., J. R. Bunch, C. B. Moler, and G. W. Stewart.\u00a0 1979.\u00a0 LINPACK User’s Guide. Society for Industrial and Applied Mathematics, Philadelphia, Penn.\u00a0 Not consecutively paginated.<\/span><\/p>\n

Dorazio, R. M.\u00a0 1993.\u00a0 Prerelease stratification in tag-recovery models with time dependence.\u00a0 Canadian Journal of Fisheries and Aquatic Sciences50:535-541.<\/span><\/p>\n

Efron, B.\u00a0 1982.\u00a0 The jackknife, the bootstrap and other resampling plans.\u00a0 Society of Industrial and Applied Mathematics.\u00a0 Series 38.<\/span><\/p>\n

Fletcher, D. J. 2012. Estimating overdispersion when fitting a generalized linear model to sparse data.\u00a0 Biometrika 99:230-237.<\/span><\/p>\n

Gelman, A.\u00a0 1996.\u00a0 Inference and monitoring convergence.\u00a0 Pages 131-143 in<\/i> W. R. Gilks, S. Richardson, and D. J. Spiegelhalter, eds.\u00a0 Markov Chain Monto Carlo in Practice.\u00a0 Chapman and Hall\/CRC, Boca Raton, Florida.<\/span><\/p>\n

Gilbert, R. O.\u00a0 1973.\u00a0 Approximation of the bias in the Jolly-Seber capture-recapture model.\u00a0 Biometrics 29:501-526.<\/span><\/p>\n

Gimenez, O., and R. Choquet.\u00a0 2010.\u00a0 Individual heterogeneity in studies on marked animals using numerical integration: capture-recapture mixed models.\u00a0 Ecology 91:951-957.<\/span><\/p>\n

Goffe, W. L., G. D. Ferrier, and J. Rogers.\u00a0 1994.\u00a0 Global optimization of statistical functions with <\/span>simulated annealing<\/a><\/span>.\u00a0 Journal of Econometrics 60(1\/2):65-100.<\/span><\/p>\n

Hargrove, J. W., and C. H. Borland.\u00a0 1994.\u00a0 Pooled population parameter estimates from mark-recapture data.\u00a0 Biometrics 50:1129-1141.<\/span><\/p>\n

Hestbeck, J. B., J. D. Nichols, and R. A. Malecki.\u00a0 1991.\u00a0 Estimates of <\/span>movement and site fidelity<\/a><\/span> using mark-resight data of wintering Canada geese.\u00a0 Ecology 72:523-533.<\/span><\/p>\n

Hines, J. E., J. D. Nichols, J. A. Royle, D. I. MacKenzie, A. M. Gopalaswamy, N. Samba Kumar, and K. U Karanth.\u00a0 2010. Tigers on trails: <\/span>occupancy modeling for cluster sampling<\/a><\/span>.\u00a0 Ecological Applications 20:1456-1466.<\/span><\/p>\n

Huggins, R. M.\u00a0 1989.\u00a0 On the statistical analysis of <\/span>capture-recapture experiments<\/a><\/span>.\u00a0 Biometrika 76:133-140.<\/span><\/p>\n

Huggins, R. M.\u00a0 1991.\u00a0 Some practical aspects of a <\/span>conditional likelihood approach<\/a><\/span> to capture experiments.\u00a0 Biometrics 47:725-732.<\/span><\/p>\n

Ivan, J. S., G. C. WHITE, and T. M. Shenk. 2013. Using auxiliary telemetry information to estimate <\/span>animal density<\/a><\/span> from capture-recapture data. Ecology 94:809-816.<\/span><\/p>\n

Ivan, J. S., G. C. White, and T. M. Shenk. 2013. Using simulation to compare methods for estimating density from capture-recapture data. Ecology 94:817-826.<\/span><\/p>\n

Jolly, G. M.\u00a0 1965.\u00a0 Explicit estimates from capture-recapture data with both death and immigration stochastic model.\u00a0 Biometrika 52:225-247.<\/span><\/p>\n

Kendall,\u00a0 W.L. and R. Bjorkland.\u00a0 2001. Using <\/span>open robust design models<\/a><\/span> to estimate temporary emigration from capture-recapture data.\u00a0 Biometrics 57(4): 1113-1122.<\/span><\/p>\n

Kendall, W. L.\u00a0 1999.\u00a0 Robustness of closed capture-recapture methods to violations of the closure assumption.\u00a0 Ecology 80:2517-2525.<\/span><\/p>\n

Kendall, W. L., J. E. Hines, J. D. Nichols, and E. H. Campbell Grant. 2013.\u00a0 Relaxing the <\/span>closure assumption in occupancy models<\/a><\/span>: staggered arrival and departure times.\u00a0 Ecology 94:610-617.\u00a0\u00a0<\/span><\/p>\n

Kendall, W. L., C. A. Langtimm, C. A. Beek, and M. C. Runge.\u00a0 2004.\u00a0 Capture-recapture analysis for estimating manatee reproductive rates.\u00a0 Marine Mammal Science 20:424-437.<\/span><\/p>\n

Kendall, W. L., J. D. Nichols, and J. E. Hines.\u00a0 1997.\u00a0 Estimating temporary emigration using capture-recapture data with Pollock’s robust design.\u00a0 Ecology 78:563-578.<\/span><\/p>\n

Kendall, W. L., and J. D. Nichols.\u00a0 1995.\u00a0 On the use of secondary capture-recapture samples to estimate temporary emigration and breeding proportions.\u00a0 Journal of Applied Statistics 22:751-762.\u00a0\u00a0<\/span><\/p>\n

Kendall, W. L. and J. D. Nichols. 2002.\u00a0 <\/span>Estimating state-transition probabilities for unobservable states<\/a><\/span> using capture-recapture\/resighting data. Ecology 83:3276-3284.<\/span><\/p>\n

Kendall, W. L., K. H. Pollock, and C. Brownie.\u00a0 1995.\u00a0 A likelihood-based approach to capture-recapture estimation of demographic parameters under the robust design.\u00a0 Biometrics 51:293-308.<\/span><\/p>\n

Kendall, W. L., G. C. White, J. E. Hines, C. A. Langtimm, and J. Yoshizaki.\u00a0 2012.\u00a0 Estimating parameters of hidden Markov models based on marked individuals: use of robust design data.\u00a0 Ecology 93:913-920.<\/span><\/p>\n

Lebreton, J-D., K. P. Burnham, J. Clobert, and D. R. Anderson.\u00a0 1992.\u00a0 Modeling survival and testing biological hypotheses using marked animals: a unified approach with case studies.\u00a0 Ecological Monographs.\u00a0 62:67-118.<\/span><\/p>\n

Lebreton, J-D., G. Hemery, J. Clobert, and H. Coquillart.\u00a0 1990.\u00a0 The estimation of age-specific breeding probabilities from recaptures or resightings in vertebrate populations.\u00a0 I.\u00a0 Transversal models.\u00a0 Biometrics 46:609-622.<\/span><\/p>\n

Lebreton, J-D., and P. M. North.\u00a0 (eds.) 1993.\u00a0 Marked individuals in the study of bird populations.\u00a0 Birkhauser Verlag, Berlin.\u00a0 397pp.<\/span><\/p>\n

Lele, S. R., B. Dennis, and F. Lutscher.\u00a0 2007.\u00a0 <\/span>Data cloning<\/a><\/span>: easy maximum likelihood estimation for complex ecological models using Bayesian Markov chain Monte Carlo methods.\u00a0 Ecology Letters 10:551-563.<\/span><\/p>\n

Lele, S. R., K. Nadeem, and B. Schmuland.\u00a0 2010.\u00a0 Estimability and likelihood inference for generalized linear mixed models using <\/span>data cloning<\/a><\/span>.\u00a0 Journal of the American Statistical Association 105:1617-1625.<\/span><\/p>\n

Likens, G. E. (ed.) 1989.\u00a0 Long-term studies in ecology.\u00a0 Springer-Verlag, Berlin.\u00a0 214pp.<\/span><\/p>\n

Lindberg, M. S., W. L. Kendall, J. E. Hines, and M. G. Anderson.\u00a0 2001.\u00a0 Combining band recovery data and Pollock’s robust design to model temporary and permanent emigration.\u00a0 Biometrics 57:273-281.<\/span><\/p>\n

Link, W. A., and R. J. Barker.\u00a0 2004.\u00a0 Hierarchical mark-recapture models: a framework for inference about demographic processes.\u00a0 Animal Biodiversity and Conservation 27:441-449.<\/span><\/p>\n

Link, W. A., and R. J. Barker.\u00a0 2005.\u00a0 Modeling association among demographic parameters in analysis of <\/span>open population capture-recapture<\/a><\/span> data.\u00a0 Biometrics 61:46-54.<\/span><\/p>\n

Lukacs, P. M., V. J. Dreitz, F. L. Knopf, and K. P. Burnham.\u00a0 2004.\u00a0 Estimating <\/span>survival probabilities of unmarked dependent young<\/a><\/span> when detection is imperfect.\u00a0 Condor 106:926-931.<\/span><\/p>\n

Lukacs, P. M., and K. P. Burnham.\u00a0 2005.\u00a0 Estimating population size from DNA-based closed capture-recapture data incorporating genotyping error.\u00a0 Journal of Wildlife Management 69:396-403.<\/span><\/p>\n

MacKenzie, D. I., J. D. Nichols, G. B. Lachman, S. Droege, J. A. Royle, and C. A. Langtimm.\u00a0 2002.\u00a0 Estimating <\/span>site occupancy<\/a><\/span> when detection probabilities are less than one.\u00a0 Ecology 83:2248-2255.<\/span><\/p>\n

MacKenzie, D. I., J. D. Nichols, J. E. Hines, M. G. Knutson, and A. B. Franklin.\u00a0 2003.\u00a0 Estimating site <\/span>occupancy, colonization and local extinction probabilities<\/a><\/span> when a species is not detected with certainty.\u00a0 Ecology 84:2200-22078.<\/span><\/p>\n

MacKenzie, D. I., L. L. Bailey, and J. D. Nichols. 2004. Investigating <\/span>species co-occurrence patterns<\/a><\/span> when species are detected imperfectly. Journal of Animal Ecology 73:546<\/span><\/p>\n

MacKenzie, D. I., J. D. Nichols, J. A. Royle, K. H. Pollock, L. L. Bailey, and J. E. Hines.\u00a0 2006.\u00a0 Occupancy estimation and modeling inference methods for patterns and dynamics of species occupancy.\u00a0 Elsevier, Inc., San Diego, California, USA.\u00a0<\/span><\/p>\n

MacKenzie, D. I., J. D. Nichols, M. E. Seamans, and R. J. Gutierrez.\u00a0 2009.\u00a0 Modeling species <\/span>occurrence dynamics with multiple states and imperfect detection<\/a><\/span>.\u00a0 Ecology 90:823-835.<\/span>
\n\u00a0<\/span>
\nMcClintock, B. T. and G. C. White.\u00a0 2009.\u00a0 A less field-intensive robust design for estimating demographic parameters with <\/span>mark-resight data<\/a><\/span>. Ecology 90:313-320.<\/span><\/p>\n

McClintock, B. T., G. C. White, M. F. Antolin, and D. W. Tripp. 2009a. Estimating abundance using <\/span>mark-resight<\/a><\/span> when sampling is with replacement or the number of marked individuals is unknown.\u00a0 Biometrics 65:237-246.<\/span>
\n\u00a0<\/span>
\nMcClintock, B. T., G. C. White, K. P. Burnham, and M. A. Pryde.\u00a0 2009b.\u00a0 A generalized mixed effects model of abundance for <\/span>mark-resight data<\/a><\/span> when sampling is without replacement.\u00a0 Pages 271-289 in D. L. Thomson, E. G. Cooch, and M. J. Conroy, editors.\u00a0 Modeling Demographic Processes in Marked Individuals.\u00a0 Springer, New York, USA.\u00a0\u00a0<\/span><\/p>\n

McCullagh, P., and J. A. Nelder.\u00a0 1989.\u00a0 Generalized linear models.\u00a0 2 Ed.\u00a0 Chapman and Hall, New York, New York, USA.\u00a0 511pp.<\/span><\/p>\n

McCullough, D. R., and R. H. Barrett.\u00a0 (eds.) 1992.\u00a0 Wildlife 2001: populations.\u00a0 Elsevier Applied Science, New York, New York, USA.\u00a0 1163pp.<\/span><\/p>\n

Miller, D. A. W., C. S. Brehme, J. E. Hines, J. D. Nichols, and R. N. Fisher. 2012.\u00a0 Joint estimation of habitat dynamics and species interactions: disturbance reduces co-occurrences of non-native predators\u00a0 with an endangered toad.\u00a0 Journal of Animal Ecology 81:1288-1297.<\/span><\/p>\n

Miller, D. A., J. D. Nichols, B. T. McClintock, E. H. C. Grant, L. L. Bailey, and L. A. Weir. 2011. Improving occupancy estimation when two types of observational error occur: non-detection and species misidentification. Ecology 92:1422-1428.<\/span><\/p>\n

Morgan, B. J. T., and P. M. North. (eds.) 1980.\u00a0 Statistics in ornithology.\u00a0 Springer-Verlag, Berlin.\u00a0 418pp<\/span><\/p>\n

Nichols, J. D. L. L. Bailey, A. F. O’Connell, N. W. Talancy, E. H. C. Grant, A. T. Gilbert, E. M. Annand, T. P. Husband, and J. E. Hines.\u00a0 2008.\u00a0 <\/span>Multi-scale occupancy estimation<\/a><\/span> and modelling using multiple detection methods. Journal of Applied Ecology 45:1321-1329<\/span><\/p>\n

Nichols, J. D., J. E. Hines, D. I. MacKenzie, M. E. Seamans, and R. J. Gutierrez.\u00a0 2007.\u00a0 <\/span>Occupancy estimation and modeling with multiple states and state uncertainty<\/a><\/span>.\u00a0 Ecology 88:1395-1400.<\/span><\/p>\n

Norris, J. L., and K. H. Pollock.\u00a0 1995.\u00a0 A capture-recapture model with heterogeneity and behavioural response.\u00a0 Environmental and Ecological Statistics 2:305-313.<\/span><\/p>\n

Norris, J. L., and K. H. Pollock.\u00a0 1996.\u00a0 Nonparametric MLE under two closed capture-recapture models with heterogeneity.\u00a0 Biometrics 52:639-649.<\/span><\/p>\n

North, P. M. (ed.) 1987.\u00a0 Ringing recovery analytic methods.\u00a0 Acta Ornithologica 23(1), 175pp.<\/span><\/p>\n

Otis, D. L., K. P. Burnham, G. C. White, and D. R. Anderson.\u00a0 1978.\u00a0 Statistical inference from capture data on closed animal populations.\u00a0 Wildlife Monograph 62.\u00a0 135pp.<\/span><\/p>\n

Otis, D. L., and G. C. White.\u00a0 2002.\u00a0 Reanalysis of a banding study to test the effects of experimental increase in bag limits on mourning doves.\u00a0 Journal of Applied Statistics 29(1-4):479-495.<\/span><\/p>\n

Parker, N. C., A. E. Giorgi, R. C. Heidinger, D. B. Jester, Jr., E. D. Prince, and G. A. Winans. (eds.) 1990.\u00a0 Fish-marking techniques.\u00a0 American Fisheries Society Symposium 7.<\/span><\/p>\n

Pavlacky, D. C., J. A. Blakesley, G. C. White, D. J. Hanni, and P. M. Lukacs.\u00a0 2012.\u00a0 <\/span>Hierarchical multi-scale occupancy estimation<\/a><\/span> for monitoring wildlife populations.\u00a0 Journal of Wildlife Management 76:154-162.<\/span><\/p>\n

Perrins, C. M., J-D. Lebreton, and G. J. M. Hirons. (eds.) 1991.\u00a0 Bird population studies: relevance to conservation and management.\u00a0 Oxford University Press, New York, New York, USA.\u00a0 683pp.<\/span><\/p>\n

Pledger, S. A.\u00a0 1998.\u00a0 <\/span>Finite mixtures in closed capture-recapture models<\/a><\/span>.\u00a0 Research Report 98-18, School of Mathematical and Computing Sciences, Victoria University of Wellington, New Zealand.<\/span><\/p>\n

Pledger, S.\u00a0 2000.\u00a0 Unified maximum likelihood estimates for <\/span>closed capture-recapture models using mixtures<\/a><\/span>.\u00a0 Biometrics 56:434-442.<\/span><\/p>\n

Pledger, S., and C. J. Schwarz.\u00a0 2002.\u00a0 Modelling heterogeneity of survival in band-recovery data using mixtures.\u00a0 Journal of Applied Statistics 29:315-327.<\/span><\/p>\n

Pledger, S., K. H. Pollock, and J. L. Norris.\u00a0 2003.\u00a0 Open capture-recapture models with heterogeneity: I. Cormack-Jolly-Seber model.\u00a0 Biometrics 59:786-794.<\/span><\/p>\n

Pollock, K. H., D. L. Solomon, and D. S. Robson.\u00a0 1974.\u00a0 Tests for mortality and recruitment in a k-sample tag-recapture experiment.\u00a0 Biometrics 30:77-87.<\/span><\/p>\n

Pollock, K. H., J. D. Nichols, C. Brownie, and J. E. Hines.\u00a0 1990.\u00a0 Statistical inference for capture-recapture experiments.\u00a0 Wildlife Monographs 107.\u00a0 97pp.<\/span><\/p>\n

Pradel, R.\u00a0 1989.\u00a0 User’s manual for program SURGE 4.0.\u00a0 C.E.P.E.\/C.N.R.S.\u00a0 Montpellier, France.\u00a0 Unpubl.\u00a0 Rept.<\/span><\/p>\n

Pradel, R. 1996.\u00a0 Utilization of capture-mark-recapture for the study of <\/span>recruitment<\/a><\/span> and <\/span>population growth rate<\/a><\/span>.\u00a0 Biometrics 52:703-709.<\/span><\/p>\n

Pradel, R., J. E. Hines, J-D. Lebreton, and J. D. Nichols.\u00a0 1997.\u00a0 Capture-recapture survival models taking account of transients.\u00a0 Biometrics 53:60-72.<\/span><\/p>\n

Pradel, R., R. Choquet, M. A. Lima, J. Merritt, and L. Crespin.\u00a0 2009.\u00a0 Estimating <\/span>population growth rate<\/a><\/span> from capture-recapture data in presence of capture heterogeneity.\u00a0 Journal of Agricultural, Biological, and Environmental Statistics.<\/span><\/p>\n

Raftery, A. E., and S. M. Lewis.\u00a0 1996.\u00a0 Implementing MCMC.\u00a0 Pages 115-130 in<\/i> W. R. Gilks, S. Richardson, and D. J. Spiegelhalter, eds.\u00a0 Markov Chain Monte Carlo in Practice.\u00a0 Chapman and Hall\/CRC, Boca Raton, Florida.<\/span><\/p>\n

Rexstad, E. A., K. P. Burnham, and D. R. Anderson.\u00a0 1990.\u00a0 Design of survival experiments using marked animals: a case study.\u00a0 American Fisheries Society Symposium 7:581-587.<\/span><\/p>\n

Richmond, O. M. W., J. E. Hines, and S. R. Beissinger.\u00a0 2010.\u00a0 <\/span>Two-species occupancy models<\/a><\/span>: new parametrization applied to co-occurrence of secretive rails.\u00a0 Ecological Applications 20:2036-2046.<\/span><\/p>\n

Robson, D. S., and W. D. Youngs.\u00a0 1971.\u00a0 Statistical analysis of reported tag-recaptures in the harvest from an exploited population.\u00a0 Biometrics Unit, Cornell University, Ithaca, New York, USA.\u00a0 BU-369-M.\u00a0 Unpubl.\u00a0 Rept.<\/span><\/p>\n

Royle, J. A., and J. D. Nichols. 2003. Estimating <\/span>abundance from repeated presence-absence data<\/a><\/span> or point counts. Ecology 84:777-790.<\/span><\/p>\n

Royle, J. A.\u00a0 2004.\u00a0 N<\/i>-mixture models for estimating population size from spatially replicated counts.\u00a0 Biometrics 60:108-115.<\/span><\/p>\n

Royle, J. A.\u00a0 2006. Site occupancy models with heterogeneous detection probabilities.\u00a0 Biometrics 62:97-102.<\/span><\/p>\n

Sandland, R. L., and P. Kirkwood.\u00a0 1981.\u00a0 Estimation of survival in marked populations with possibly dependent sighting probabilities.\u00a0 Biometrika 68: 531-541.<\/span><\/p>\n

Schwarz, C. J., and A. N. Arnason.\u00a0 1996.\u00a0 A general methodology for the analysis of capture-recapture experiments in open populations.\u00a0 Biometrics 52:860-873.<\/span><\/p>\n

Seber, G. A. F.\u00a0 1965.\u00a0 A note on the multiple recapture census.\u00a0 Biometrika 52:249-259.<\/span><\/p>\n

Seber, G. A. F.\u00a0 1970.\u00a0 Estimating time-specific survival and reporting rates for adult birds from band returns.\u00a0 Biometrika 57:313-318.<\/span><\/p>\n

Seber, G. A. F.\u00a0 1982.\u00a0 The estimation of animal abundance and related parameters.\u00a0 2nd ed.\u00a0 Macmillan, New York, New York, USA.\u00a0 654pp.<\/span><\/p>\n

Seber, G. A. F.\u00a0 1986.\u00a0 A review of estimating animal abundance.\u00a0 Biometrics 42:267-292.<\/span><\/p>\n

Seber, G. A. F.\u00a0 1992.\u00a0 A review of estimating animal abundance II.\u00a0 Reviews of the International Statistics Institute 60:129-166.<\/span><\/p>\n

Seber, G. A. F., and J. F. Whale.\u00a0 1970.\u00a0 The removal method for two and three samples.\u00a0 Biometrics 26:393-400.<\/span><\/p>\n

Skalski, J. R., Hoffman, A., and Smith, S. G.\u00a0 1993.\u00a0 Testing the significance of individual- and cohort-level covariates in animal survival studies.\u00a0 Pages 9-28 In J.-D.\u00a0 Lebreton and P. M. North, editors.\u00a0 Marked individuals in the study of bird population.\u00a0 Birkhauser Verlag, Basel, Switzerland.<\/span><\/p>\n

Wedderburn, R. W. M.\u00a0 1974.\u00a0 Quasi-likelihood functions, generalized linear models and the Gauss-Newton method.\u00a0 Biometrika 61:439-447.<\/span><\/p>\n

White, G. C., D. R. Anderson, K. P. Burnham, and D. L. Otis.\u00a0 1982.\u00a0 Capture-recapture and removal methods for sampling closed populations.\u00a0 Los Alamos National Laboratory Rep.\u00a0 LA-8787-NERP, Los Alamos, New Mexico, USA.\u00a0 235pp.<\/span><\/p>\n

White, G. C.\u00a0 1983.\u00a0 Numerical estimation of survival rates from band-recovery and biotelemetry data.\u00a0 Journal of\u00a0 Wildlife Management\u00a0 47:716-728.<\/span><\/p>\n

White, G. C. and R. A. Garrott.\u00a0 1990.\u00a0 Analysis of Wildlife Radio-tracking Data.\u00a0 Academic Press, New York, New York, USA. 383 pp.<\/span><\/p>\n

White, G. C. 1996. NOREMARK: population estimation from mark-resighting surveys.\u00a0 Wildlife Society Bulletin 24:50-52.<\/span><\/p>\n

White, G. C., and K. P. Burnham.\u00a0 1999.\u00a0 Program MARK: survival estimation from populations of marked animals.\u00a0 Bird Study 46 Supplement:120-138.<\/span><\/p>\n

White, G. C., K. P. Burnham, and D. R. Anderson.\u00a0 2001.\u00a0 Advanced features of Program Mark.\u00a0 Pages 368-377 in R. Field, R. J. Warren, H. Okarma, and P. R. Sievert, editors.\u00a0 Wildlife, land, and people: priorities for the 21st century.\u00a0 Proceedings of the Second International Wildlife Management Congress.\u00a0 The Wildlife Society, Bethesda, Maryland, USA.<\/span><\/p>\n

White, G. C., and T. M. Shenk. 2001. Population estimation with radio-marked animals. Pages 329-350 in<\/i> J. Millspaugh and J. M. Marzluff, editors. Radio Tracking and Animal Populations. Academic Press, San Diego, California .<\/span><\/p>\n

White, G. C.\u00a0 2002.\u00a0 Discussant: The Use of Auxiliary Variables in Capture-Recapture Modeling: An Overview.\u00a0 Journal of Applied Statistics 29(1-4):103-106.<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"

Contents – Index Literature Cited Following are references that provide background information to understanding the methods of Program MARK. Akaike, H. 1985.\u00a0 Prediction and entropy.\u00a0 Pages 1-24 in A. C. Atkinson and S.E.\u00a0 Fienberg, (eds.) A Celebration of Statistics: the …<\/p>\n

Literature Cited<\/span> Read More »<\/a><\/p>\n","protected":false},"author":117,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-216","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/216","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/users\/117"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/comments?post=216"}],"version-history":[{"count":4,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/216\/revisions"}],"predecessor-version":[{"id":295,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/216\/revisions\/295"}],"wp:attachment":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/media?parent=216"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}