{"id":363,"date":"2017-05-05T19:45:40","date_gmt":"2017-05-05T19:45:40","guid":{"rendered":"http:\/\/sites.warnercnr.colostate.edu\/gwhite\/?page_id=363"},"modified":"2017-05-05T19:45:40","modified_gmt":"2017-05-05T19:45:40","slug":"chat","status":"publish","type":"page","link":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/chat\/","title":{"rendered":"CHat"},"content":{"rendered":"<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\"><a href=\"http:\/\/oldweb.warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/index.html\">Contents<\/a> &#8211; <a href=\"http:\/\/oldweb.warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/idx.htm\">Index<\/a><\/span><\/p>\n<hr \/>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\"><b><i>CHat<\/i><\/b><\/span><\/p>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">Enter a new value for the quasi-likelihood parameter (<i>c<\/i>-hat).\u00a0 Typically, this value is 1.0000, meaning that the data are not over-dispersed, i.e., no extrabinomial variation.\u00a0 However, you may want to correct for overdispersion by increasing the value.\u00a0 An estimator of <i>c<\/i>-hat is the <\/span><span style=\"font-family: Arial, helvetica, sans-serif;font-size: small\"><a href=\"http:\/\/oldweb.warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/deviance.htm\">deviance<\/a><\/span><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\"> divided by its degrees of freedom, although this estimator generally is biased high for finite sample sizes.<\/span><\/p>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">The value for <i>c<\/i> cannot be &lt;1, because there is no biologically reasonable model that would generate underdispersed data.<\/span><\/p>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">The value of c-hat is used to compute the <a href=\"http:\/\/oldweb.warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/qaicc.htm\">QAIC<\/a> (quasi-AIC) for a model with <i>k<\/i> parameters by the following formula:<\/span><\/p>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">QAIC = -2log Likelihood\/c-hat + 2<i>K<\/i><\/span><\/p>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">and the <a href=\"http:\/\/oldweb.warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/qaicc.htm\">QAIC<\/a> by the formula:<\/span><\/p>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">QAICc = -2log Likelihood\/c-hat + 2<i>K<\/i> + 2<i>K<\/i>(<i>K<\/i> + 1)\/(<i>n<\/i>-ess &#8211; <i>K<\/i> &#8211; 1)<\/span><\/p>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">where <i>n<\/i>-ess is the effective sample size.<\/span><\/p>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">Values of c-hat &gt; 1 can also be used to compute <a href=\"http:\/\/oldweb.warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/profile_likelihood_confidence_intervals.htm\">profile likelihod confidense intervals<\/a>.<\/span><\/p>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">Methods in MARK to estimate c are the <\/span><span style=\"font-family: Arial, helvetica, sans-serif;font-size: small\"><a href=\"http:\/\/oldweb.warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/median_chat.htm\">median chat<\/a><\/span><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\"> and the <\/span><span style=\"font-family: Arial, helvetica, sans-serif;font-size: small\"><a href=\"http:\/\/oldweb.warnercnr.colostate.edu\/~gwhite\/mark\/markhelp\/fletcher_chat.htm\">Fletcher chat<\/a><\/span><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\"> estimators.<\/span><\/p>\n<p><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">More details on c-hat are provided on the WWW page <\/span><span style=\"color: #0000ff;font-family: 'Courier New', courier, typewriter, monospace;font-size: small\"><a href=\"http:\/\/warnercnr.colostate.edu\/~gwhite\/fw663\/Mark.html\">http:\/\/warnercnr.colostate.edu\/~gwhite\/fw663\/Mark.html<\/a><\/span><span style=\"color: #0000ff;font-family: Arial, helvetica, sans-serif;font-size: small\">.<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Contents &#8211; Index CHat Enter a new value for the quasi-likelihood parameter (c-hat).\u00a0 Typically, this value is 1.0000, meaning that the data are not over-dispersed, i.e., no extrabinomial variation.\u00a0 However, you may want to correct for overdispersion by increasing the &hellip;<\/p>\n<p class=\"read-more\"> <a class=\"more-link\" href=\"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/chat\/\"> <span class=\"screen-reader-text\">CHat<\/span> Read More &raquo;<\/a><\/p>\n","protected":false},"author":117,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-363","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/363","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/users\/117"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/comments?post=363"}],"version-history":[{"count":1,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/363\/revisions"}],"predecessor-version":[{"id":364,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/363\/revisions\/364"}],"wp:attachment":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/media?parent=363"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}