{"id":426,"date":"2017-05-06T04:53:30","date_gmt":"2017-05-06T04:53:30","guid":{"rendered":"http:\/\/sites.warnercnr.colostate.edu\/gwhite\/?page_id=426"},"modified":"2017-05-06T04:53:30","modified_gmt":"2017-05-06T04:53:30","slug":"encounter-histories-format","status":"publish","type":"page","link":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/encounter-histories-format\/","title":{"rendered":"Encounter Histories Format"},"content":{"rendered":"

Contents<\/a> – Index<\/a><\/span><\/p>\n

\n

Encounter Histories Format<\/b><\/span><\/p>\n

Each data type of Program MARK requires a primary form of data entry provided by the encounter histories.\u00a0 Encounter histories can be either information on only live encounters (LLLL) or information on both live and dead encounters (LDLDLDLD).\u00a0 In addition, some data types allow a summary format that reduces the amount of input.\u00a0 The following table summaries the input for each data type as specified in the encounter histories file<\/a>.<\/span><\/p>\n

\u00a0<\/b><\/span>
\nData TypeEncounter History Format Additional Input Format, Notes<\/b><\/span>
\nRecaptures only (CJS) LLLL allows . in enc. hist.\u00a0<\/span>
\nRecoveries only LDLDLDLD Recovery matrix\u00a0<\/span>
\nBoth (Burnham) LDLDLDLD\u00a0\u00a0<\/span>
\nKnown Fate<\/a> LDLDLDLD Known fate\u00a0<\/span>
\nClosed Captures<\/a> LLLL\u00a0\u00a0<\/span>
\nBTO Ring Recoveries LDLDLDLD Recovery matrix\u00a0<\/span>
\nRobust Design<\/a> LLLL\u00a0\u00a0<\/span>
\nBoth (Barker)<\/a> LDLDLDLD\u00a0\u00a0<\/span>
\nMulti-strata Recaptures\u00a0 LLLL\u00a0\u00a0<\/span>
\nBrownie et al. Recoveries LDLDLDLD Recovery matrix\u00a0<\/span>
\nJolly-Seber<\/a> LLLL\u00a0\u00a0<\/span>
\nHuggins’ Closed Captures<\/a> LLLL\u00a0\u00a0<\/span>
\nRobust Design (Huggins Est.)<\/a> LLLL\u00a0\u00a0<\/span>
\nPradel Recruitment only<\/a> LLLL\u00a0\u00a0<\/span>
\nPradel Survival and Seniority<\/a> LLLL\u00a0\u00a0<\/span>
\nPradel Survival and Lambda<\/a> LLLL\u00a0\u00a0<\/span>
\nPradel Survival and Recruitment<\/a>LLLL\u00a0\u00a0\u00a0<\/span>
\nBarker Robust Design<\/a> LDLDLDLD\u00a0\u00a0<\/span>
\nPOPAN<\/a> LLLL\u00a0\u00a0<\/span>
\nVPA — Virtual Population Analysis LDLDLDLD\u00a0\u00a0<\/span>
\nMulti-strata — Live and Dead Enc.<\/a>LDLDLDLD\u00a0\u00a0\u00a0<\/span>
\nClosed Captures with Het.<\/a> LLLL\u00a0\u00a0<\/span>
\nFull Closed Captures with Het.<\/a> LLLL\u00a0\u00a0<\/span>
\nNest Survival<\/a> LDLDLDLD Nest survival\u00a0\u00a0<\/span>
\nOccupancy Estimation<\/a> LLLL allows . in enc. hist.\u00a0<\/span>
\nRobust Design Occupancy Estimation<\/a>LLLL allows . in enc. hist.\u00a0\u00a0<\/span>
\nOpen Robust Design Multi-strata<\/a>LLLL\u00a0\u00a0\u00a0<\/span>
\nClosed Robust Design Multi-strata<\/a>LLLL\u00a0\u00a0\u00a0<\/span>
\nDensity<\/a><\/span> using radio-tracking LLLL grid total allows . in enc. hist.\u00a0<\/span><\/p>\n

Following each encounter encounter history is the number of animals with this encounter history for each group (known as frequencies).\u00a0 One or more spaces are used to separate the encounter history from the frequencies. Note that frequencies are counts, and are not limited to just the values of 0 and 1. In other words, the frequencies are not indicator or dummy variables to specify the group identification.\u00a0 The frequencies are used in the log likelihood to provide the observed number of animals with this cell probability in the form observed*log(probability).<\/span><\/p>\n

If individual covariates<\/a> are included, these values follow the frequencies for each group.\u00a0 Typically with individual covariates, only one frequency will be non-zero, usually with a value of 1 because only one animal would have the specific set of individual covariate values.\u00a0 One or more speces are used to separate the individual covariates.<\/span><\/p>\n

A semicolon terminates the input for each encounter history.<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"

Contents – Index Encounter Histories Format Each data type of Program MARK requires a primary form of data entry provided by the encounter histories.\u00a0 Encounter histories can be either information on only live encounters (LLLL) or information on both live …<\/p>\n

Encounter Histories Format<\/span> Read More »<\/a><\/p>\n","protected":false},"author":117,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-426","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/426","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/users\/117"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/comments?post=426"}],"version-history":[{"count":1,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/426\/revisions"}],"predecessor-version":[{"id":427,"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/pages\/426\/revisions\/427"}],"wp:attachment":[{"href":"https:\/\/sites.warnercnr.colostate.edu\/gwhite\/wp-json\/wp\/v2\/media?parent=426"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}