Publications

Refereed Journal Articles (* students or postdoctoral researchers as first authors):

109. Gorsich, E. E., C. T. Webb, A. A. Merton, J. A. Hoeting, R. S. Miller, M. L. Farnsworth, S. R. Swafford, T. J. DeLiberto, K. Pedersen, A. B. Franklin, R. G. McLean, K. R. Wilson, and P. F. Doherty, Jr. 2020. Continental-scale dynamics of avian influenza in U.S. waterfowl are driven by demography, migration, and temperature. Ecological Applications n/a:e2245.

108. *Martin, E., K. Jochum, C. Bagley, and P.F. Doherty, Jr. 2020. Shorebird abundance estimates in interior Alaska. Journal of Wildlife Management 84:1283-1295. (Highlighted in the Wildlife Professional:https://wildlife.org/jwm-shorebirds-take-advantage-of-alaska-military-lands/)

107. Duca, C.D., A.B. Walquiria, and P.F. Doherty, Jr. 2019. Predator search image and the dilution effect: when is the best timing to nest? Auk 136:1-7.

106. *Dertien, J., C. Bagley, J. Haddix, A. Brinkman, E. Neipert, K. Jochum, P. Doherty, Jr. 2019. Spatiotemporal habitat use by a multi-trophic Alaska alpine mammal community. Canadian Journal of Zoology 97:713-723.

105. *Peterson, M. E., C. R. Anderson JR, M. W. Alldredge, and P. F. Doherty, 2018. Using maternal mule deer movements to estimate timing of parturition and assist fawn captures. Wildlife Society Bulletin 42:616-621.

104. Schoenecker, K. A., P. F. Doherty, J. S. Hourt, and J. P. Romero. 2018. Testing infrared camera surveys and distance analyses to estimate feral horse abundance in a known population. Wildlife Society Bulletin 42:452-459.

103. Vu, T. T., L. M. Tran, M. D. Nguyen, D. Van Tran, P. F. Doherty, T. T. Giang, and H. T. Dong. 2018. A distance sampling approach to estimate density and abundance of gibbon groups. American Journal of Primatology 80 (9), e22903.

102. Winchell, C. S., and P. F. Doherty. 2018. Restoring habitat for coastal California Gnatcatchers (Polioptila californica californica). The Condor 120:581-595.

101. *Paschoal, A.M. de O., R.L. Massara, L.L. Bailey, P.F. Doherty, Jr., P.M. Santos, A.P. Paglia, A. Hirsch, and A.G. Chiarello. 2018. Anthropogenic disturbances drive domestic dog use of Atlantic forest protected areas. Tropical Conservation Science 11:1-14.

100. *Laufenberg, J.S., H.E. Johnson, P.F. Doherty, Jr., and S.W. Breck. 2018. Compounding effects of human development and a natural food shortage on a black bear population along a human development-wildland interface. Biological Conservation 224:188-198.

99. *Peterson, M. E., Anderson Jr, and Doherty Jr, P. F. 2018. Mortality of Mule Deer Fawns in a Natural Gas Development Area. The Journal of Wildlife Management 82:1135-1148.

98. Massara, R.L, A. M. d. O. Paschoal, L. L. Bailey, P. F. Doherty, Jr., M. d. F. Barreto, and A.G. Chiarello. 2018. Effect of humans and pumas on the temporal activity of ocelots in protected areas of Atlantic Forest. Journal: Mammalian Biology 92:86-93.

97. *Massara, R.,, A. M. d. O. Paschoal,, L. L. Bailey,, P. F. Doherty,, A. Hirsch, and A. G. Chiarello. 2018. Factors influencing ocelot occupancy in Brazilian Atlantic Forest reserves. Biotropica: 50:125-134.

96. *Macias-Duarte, A., A. O. Panjabi, E. H. Strasser, G. J. Levandoski, I. Ruvalcaba-Ortega, P. F. Doherty, and C. I. Ortega-Rosas. 2017. Winter survival of North American grassland birds is driven by weather and grassland condition in the Chihuahuan Desert. Journal of Field Ornithology 88:374-386.

95. *Guimaraes, M., R. Munguia-Steyer, P. F. Doherty, and R. J. Sawaya. 2017. No survival costs for sexually selected traits in a polygynous non-territorial lizard. Biological Journal of the Linnean Society 122:614-626.

94. Vu Tien, T., D. V. Tran, T. T. Giang, V. H. Nguyen, M. D. Nguyen, T. C. Nguyen, N. K. Tuyet and P. Doherty 2017. A mark-recapture population size estimation of southern yellow-cheeked crested gibbon (Nomascus gabriellae) in Chu Yang Sin National Park, Vietnam. Asian Primates Journal 61(1): 33-43.

93. *Peterson, M. E., Anderson Jr, C. R., Northrup, J. M. and Doherty Jr, P. F. 2017. Reproductive success of mule deer in a natural development area. – Wildlife Biology: wlb.00341

92. *Dertien, J. S., P. F. Doherty, C. F. Bagley, J. A. Haddix, A. R. Brinkman, and E. S. Neipert. Evaluating dall’s sheep habitat use via camera traps. The Journal of Wildlife Management 81:1457-1467.

91. Macario, P., M. Pichorim, P. F. Doherty, Jr., G. S. Toledo-Lima, T. M. Oliveira-Junior, T. P. F. Camara, S. M. Melo, J. L. S. Silveira, J. C. Araujo and L. F. Franca (2017). “Apparent survival and cost of reproduction for White-lined Tanager (Tachyphonus rufus, Thraupidae) in the northern Atlantic Rainforest, Brazil.” PLoS One 12(10): e0185890.

90. *Arief, R. A., K. Hampson, A. Jatikusumah, M. D. W. Widyastuti, Sunandar, C. Basri, A. A. G. Putra, I. Willyanto, A. T. S. Estoepangestie, I. W. Mardiana, I. K. G. N. Kesuma, I. P. Sumantra, P. F. Doherty, M. D. Salman, J. Gilbert, and F. Unger. 2017. Determinants of Vaccination Coverage and Consequences for Rabies Control in Bali, Indonesia. Frontiers in Veterinary Science 3:Arcticle 123.

89. *Massara, R. L., A. M. O. Paschoal, L. L. Bailey, J. P. F. Doherty, and A. G. Chiarello. 2016. Ecological interactions between ocelots and sympatric mesocarnivores in protected areas of the Atlantic Forest, southeastern Brazil. Journal of Mammalogy 97:1634-1644.

88. *Paschoal, A. M. O., R. L. Massara, L. L. Bailey, W. L. Kendall, P. F. Doherty, A. Hirsch, A. G. Chiarello, and A. P. Paglia. 2016. Use of Atlantic Forest protected areas by free-ranging dogs: estimating abundance and persistence of use. Ecosphere 7:1-15: e01480.

87. *Davis, A.J., M.L. Phillips, and P.F. Doherty, Jr. Declining recruitment of Gunnison Sage-Grouse highlights the need monitor juvenile survival. Condor-Ornithological Applications 118:477-488.

86. Dugger, K. M., E. D. Forsman, A. B. Franklin, R. J. Davis, G. C. White, C. J. Schwarz, K. P. Burnham, J. D. Nichols, J. E. Hines, C. B. Yackulic, P. F. Doherty, L. Bailey, D. A. Clark, S. H. Ackers, L. S. Andrews, B. Augustine, B. L. Biswell, J. Blakesley, P. C. Carlson, M. J. Clement, L. V. Diller, E. M. Glenn, A. Green, S. A. Gremel, D. R. Herter, J. M. Higley, J. Hobson, R. B. Horn, K. P. Huyvaert, C. McCafferty, T. McDonald, K. McDonnell, G. S. Olson, J. A. Reid, J. Rockweit, V. Ruiz, J. Saenz, and S. G. Sovern. 2015. The effects of habitat, climate, and Barred Owls on long-term demography of Northern Spotted Owls. 2016. The Condor 118:57-116.

85. *Gutiérrez-González, C. E., M. A. Gómez-Ramírez, C. A. López-González, and P. F. Doherty, Jr. 2015. Are Private Reserves Effective for Jaguar Conservation? PLoS ONE 10:e0137541.

84. *Massara, R. L., A. M. d. O. Paschoal, P. F. Doherty, Jr., A. Hirsch, and A. G. Chiarello. 2015. Ocelot Population Status in Protected Brazilian Atlantic Forest. PLoS ONE 10:e0141333.

83. *Davis, A. J., M. L. Phillips, and P. F. Doherty, Jr. 2015. Nest Success of Gunnison Sage-Grouse in Colorado, USA. PLoS ONE 10:e0136310.

82. *Bergman, E. J., P. F. Doherty, G. C. White, and A. A. Holland. 2015. Density dependence in mule deer: a review of evidence. Wildlife Biology 21:18-29.

81. *Davis, A. J., M. L. Phillips, and P. F. Doherty 2015. Survival of Gunnison sage-grouse Centrocercus minimus in Colorado, USA. Journal of Avian Biology 46:186-192.

80. Acuña-Marrero, D., J. Jiménez, F. Smith, P.F. Doherty, Jr., A.Hearn, J.R. Green, J. Paredes4 and P. Salinas-de-León. 2014. Whale shark (Rhincodon typus) seasonal presence, residence time and habitat use at Darwin Island, Galapagos Marine Reserve. PLoS ONE 9(12): e115946. doi:10.1371/journal.pone.0115946.

79. Winchell, C. S., and P. F. Doherty 2014. Effects of habitat quality and wildfire on occupancy dynamics of Coastal California Gnatcatcher (Polioptila californica californica). The Condor 116:538-545.

78. *Harrington, A. H., and P. F. Doherty 2014. Foraging frequency of juvenile Mountain Plovers (Charadius montanus) among three Colorado habitat types. Journal of Undergarduate Research and Scholarly Excellence 5:35-38.

77. *Davis, A. J., M. B. Hooten, M. L. Phillips, and P. F. Doherty, Jr. 2014. An integrated modeling approach to estimating Gunnison sage-grouse population dynamics: combining index and demographic data. Ecology and Evolution 4:4247-4257.

76. *Bergman, E.J., P.F. Doherty, Jr., C.J. Bishop, L.L. Wolfe, and B.A. Banulis. 2014. Herbivore body condition response in altered environments: mule deer and habitat management. PLoS ONE 9(9): e106374. doi:10.1371/journal.pone.0106374

75. *Gimenez, O., L. Blanc, A. Besnard, R. Pradel, P. F. Doherty, E. Marboutin, and R. Choquet. 2014. Fitting occupancy models with E-SURGE: hidden Markov modelling of presence–absence data. Methods in Ecology and Evolution 5:592-597.

74.*Guimarães, M., P. F. Doherty, and R. Munguía-Steyer. 2014. Strengthening Population Inference in Herpetofaunal Studies by Addressing Detection Probability. South American Journal of Herpetology 9:1-8.

73. *Guimarães, M., R. Munguía-Steyer, P. F. Doherty, Jr., M. Martins, and R. J. Sawaya. 2014. Population Dynamics of the Critically Endangered Golden Lancehead Pitviper, Bothrops insularis,: Stability or Decline? Plos One 9:e95203.

72.  *Bergman, E. J., C. J. Bishop, D. J. Freddy, G. C. White, and P. F. Doherty. 2014. Habitat management influences overwinter survival of mule deer fawns in Colorado. The Journal of Wildlife Management 78:448-455.

71. *Guimarães, M., D. T. Corrêa, S. S. Filho, T. A. L. Oliveira, P. F. Doherty, and R. J. Sawaya. 2014. One step forward: contrasting the effects of Toe clipping and PIT tagging on frog survival and recapture probability. Ecology and Evolution: online: 24 MAR 2014 | DOI: 10.1002/ece3.1047

70. *Devineau, O., W. L. Kendall, P. F. Doherty, T. M. Shenk, G. C. White, P. M. Lukacs, and K. P. Burnham. 2014. Increased flexibility for modeling telemetry and nest-survival data using the multistate framework. The Journal of Wildlife Management 78:224-230.

69. *Bled, F., J. Sauer, K. Pardieck, P. Doherty, and J.A. Royle. 2013. Modeling trends from North American breeding bird survey data: a spatially explicit approach.  PlosOne 8:e81867.

68. *Eads, D.A., D.E. Biggins, P.F. Doherty, Jr., K.L. Gage, K.P. Huyvaert, D.H. Long, and M.F. Antolin. 2013, Using occupancy models to investigate the prevalence of  ectoparasitic vectors on hosts: an example with fleas on prairie dogs  International Journal for Parasitology: Parasites and Wildlife 2:246-256.

67. Roy, C.L., C.M. Herwig, and P.F. Doherty, Jr. 2013. Survival and refuge use of young ring-necked ducks before and during hunting season in north-central Minnesota. Journal of Wildlife Management 77:947-956.

66. *Molina-Zuluaga, C., Doherty, Jr., P.F., Zúñiga-Vega, J.J., and J.G. Zamora-Abrego.  2013. Survivorship, growth and detection of a knob-scaled lizard in Queretaro, Mexico. Journal of Herpetology 47:156-161.

65. *Vu, T.T. P.F. Doherty, Jr., T.H. Bui and K.P. Huyvaert. 2012. Road crossing by birds in a tropical forest in northern Vietnam.  Condor 114:639-644.

64. *Ruiz-Gutierrez, V., P.F. Doherty, Jr. E. Santana C., S.C. Martinez, J. Schondube, H.V. Munguia, and E. Inigo-Elias. 2012.  Survival of resident neotropical birds: considerations for sampling and analysis based on 20 years of bird-banding efforts in Mexico. Auk 129:500-509.

63. *Thinh, T.V., K.P. Huyvaert, and P.F. Doherty, Jr. 2012. Effects of different logging schemes on bird communities in tropical forests: A simulation study. Ecological Modelling 243:95-100.

62. Mauck, R., C. Huntington, and P. Doherty. 2012. Experience versus effort: what explains dynamic heterogeneity with respect to age?  Oikos 12:1379-1390.

61. *Thinh, T.V., Gilbert, M., Bunpapong, N., Amonsin, A., Nguyen, D.T., Doherty, Jr., P.F., and K.P. Huyvaert. 2012. Avian influenza viruses in wild land birds in northern Vietnam. Journal of Wildlife Diseases 48:195-200. Highlighted as a notable paper by The Wildlife Disease Association).

60. Doherty, Jr., P.F., G.C. White and K.P. Burnham. 2012. Comparison of model building strategies when all possible model structures cannot be constructed.  Journal of Ornithology 152 (Suppl 2):S317–S323.

59. Feare, C. J. and P. F. Doherty, Jr. 2011. Age at first breeding and pre-breeding survival in Seychelles Sooty Terns Onychoprion fuscatus. Marine Ornithology 39:221-226.

58. *Vu, T.T. P.F. Doherty, Jr., and K.P. Huyvaert. 2012.  Avian conservation value of pine plantation forests in northern Vietnam. Bird Conservation International 22:193-204.

57. *Devineau, O., T.M. Shenk, P.F. Doherty, Jr., G.C. White, and R.H. Kahn. 2011. Assessing release protocols used for the Canada Lynx (Lynx canadensis) reintroduction in Colorado: recommendations for future efforts.  Journal of Wildlife Management 75:623-630.

56. Ryan, G.E., V. Dove, F. Trujillo, and P.F. Doherty, Jr. 2011. Irrawaddy dolphin demography in the Mekong River: an application of mark-resight models. Ecosphere: May 2:article 58.(highlighted by > 50 news organizations).

55. *Buhnerkempe, M., N. Burch, S. Hamilton, K. M. Byrne, E. Childers, L.N. Davis, P.F. Doherty, Jr., K. A. Holfelder,  M.I. Pyne, G. Schroeder. 2011. The Utility of Transient Sensitivity for Wildlife Management and Conservation: Bison as a Case Study Biological Conservation 144:1808-1815.

54. *Cubaynes, S., P. F. Doherty, E. A. Schreiber, and O. Gimenez. 2011. To breed or not to breed: a seabird’s response to extreme climatic events. Biology Letters 7:303-306.

53. *Dooley, J.L., T.A. Sanders, and P.F. Doherty, Jr. 2010. Effects of hunting season structure, environmental factors, and body condition on overwintering mallard survival. Wildlife Biology 16:357-366.

52. *Dooley, J.L., T.A. Sanders, and P.F. Doherty, Jr. 2010. Mallard response to experimental walk-in and shooting disturbance: implications for waterfowl hunting closures. Journal of Wildlife Management 74:1815-1824. (reported on in the Dec 2013-Jan 2014 issue of Field and Stream).

51. *Péron, G., P-A. Crochet, P.F. Doherty, Jr., and J-D. Lebreton. 2010. Studying dispersal at the landscape scale: efficient combination of population surveys and capture-recapture data. Ecology 11:3365-3375.

50. Collins, C.T., P.F. Doherty, Jr., and P.L. Knapp. 2010. Intercolony movement and survival of Caspian terns in southern California. North American Bird Bander 35:175-178.

49. *Oesterle, P., N. Nemeth, R. Bowen, P.F. Doherty, Jr., R. McLean and L. Clark. 2010. Experimental Exposure of Swallow Bugs (Hemiptera: Cimicidae) to West Nile virus. Journal of Medical Entomology 47:897-901.

48. *Oesterle, P., N. Nemeth, R. Bowen, P.F. Doherty, Jr., R. McLean and L. Clark. 2010. Cliff Swallows, Swallow Bugs, and West Nile Virus: An Unlikely Transmission Mechanism. Vector-Borne and Zoonotic Diseases 10:507-513

47. Ball, L.C., P.F. Doherty, Jr., S.D. Ostermann-Kelm, M.W. McDonald. 2010. The use of occupancy estimation to evaluate the effect of rain on the Palm Springs round-tailed ground squirrel in the Sonoran Desert. Journal of Wildlife Management 74:954-962.

46. *Pyne, M.I., M Buhnerkempe, N. Burch, K. M. Byrne, E. Childers, L.N. Davis, P.F. Doherty, Jr. S. Hamilton, K. A. Holfelder, and G. Schroeder. 2010. Survival and Breeding Transitions for a Reintroduced Bison Population: a Multistate Approach.  Journal of Wildlife Management 74:1463-1471. (Highlighted in The Wildlife Professional).

45. *Gómez-Díaz, E., J., P. F., Doherty, Jr., D. Duneau, and K. McCoy, D., 2010. Cryptic vector divergence masks vector-specific patterns of infection: an example from the marine cycle of Lyme borreliosis. Evolutionary Applications 3:399-401. (Evolutionary Applications highlighted this paper with the cover photo).

44. *Devineau, O., T. M. Shenk, G.C. White, P.F. Doherty, Jr., P. M. Lukacs, and R. H. Kahn. 2010. Evaluating the lynx reintroduction program in Colorado by examining mortality patterns. Journal of Applied Ecology 47:524-531. (This paper was the Editor’s choice for this issue, see  http://www.journalofappliedecology.org/view/0/editorschoice473)

43. *Tipton, H., P.F. Doherty, Jr., and V. Dreitz. 2009. Abundance and density of mountain plover (Charadrius montanus) and burrowing owl (Athene cunicularia) in eastern Colorado.  Auk 126:493-499.

42. *Zimmerman, G.S., W.L. Kendall, T.J. Moser, P.F. Doherty, Jr., G.C. White, and D.F. Caswell. 2009. Reporting and harvesting probabilities for North American geese: influence of dollar value, population, and spatial factors. Journal of Wildlife Management: 73:710-719.

41. *Converse, S. J., W. L. Kendall, P. F. Doherty, Jr., and Peter Ryan. 2009. Multistate models for estimation of survival and reproduction in grey-headed albatross. Auk 126:77-88.

40. Kendall, W.L., S.J. Converse, P.F. Doherty, Jr., M.B. Naughton, A. Anders, J.E. Hines, E. Flint. 2009. Sampling design considerations in demographic studies of marked populations: a case of colonial seabirds. Ecological Applications 19:55-68.

39. *Zimmerman, G.S., W.L. Kendall, T.J. Moser, G.C. White, and P.F. Doherty, Jr. 2009.  Temporal patterns of leg band retention in North American geese.  Journal of Wildlife Management 73:82-88.

38. *Grant T. and P. F. Doherty, Jr. 2009. Potential mortality effects of off-highway vehicles on the Flat-tailed Horned Lizard (Phrynosoma mcallii): A manipulative experiment.  Environmental Management 43:508-513.

37. *Converse, S. J., W. L. Kendall, P. F. Doherty, Jr., M. B. Naughton, and J. E. Hines. 2009. A traditional and a less-invasive robust design: choices in optimizing effort allocation for seabird population studies. Environmental and Ecological Statistics 3:729-746.

36. Winchell, C. S. and P. F. Doherty. 2008. Using California gnatcatcher to test underlying models in habitat conservation plans. Journal of Wildlife Management 72:1322-1327.

35. *Grant, T. and P.F. Doherty. 2008. Phrynosoma mcallii (Flat-tailed Horned Lizard) rain harvesting.  Herpetological Review 39:90.

34. *Tipton, H., V. Dreitz and P.F. Doherty, Jr. 2008. Occupancy of two shortgrass prairie avian species in Colorado.  Journal of Wildlife Management: 72:1001-1006.

33. *Becket, S. Komar, N., and P.F. Doherty, Jr. 2007. Eurasian Collared-Dove in northeastern Colorado: increasing numbers of an invasive species.  Wilson Journal of Ornithology 119:471-475.

32. *Veran, S., O. Gimenez, E. Flint, W.L. Kendall, P.F. Doherty, Jr., and J-D Lebreton. 2007. The impact of longline fishery bycatch on adult survival of Black-footed albatrosses (Phoebastria nigripes). J. Applied Ecology 44:942-952.

31. *Grant, T. J. and P. F. Doherty, Jr.  2007. Monitoring of the flat-tailed horned lizard with methods incorporating detection probability.  Journal of Wildlife Management 71:1050-1056.

30. Lukacs, P. L., W. L. Thompson, W.L. Kendall, W. R, Gould, P.F. Doherty, Jr., K.P. Burnham, and D.R. Anderson. 2007. Concerns regarding a call for pluralism.  Journal of Applied Ecology 44:456-460.

29. *Grant, T. J., and P. F. Doherty. 2006. Phrynosoma mcallii (Flat-tailed Horned Lizard) Hibernation. Herpetological Review 37:346-347.

28. Waugh, S. M., P. F. Doherty, Jr., A.N.D. Freeman, L. Adams, G.C. Woods, J.A. Bartle, and G. K. Hedley.  2006.  Demography of Westland Petrel Procellaria westlandica, 1995-2003. Emu 106:219-226.

27. Collins, C. T. and P. F. Doherty, Jr. 2006.  Survival estimates of Royal Terns in southern California.  Journal of Field Ornithology 77:310-314

26. Doherty, P. F., Jr.  Kendall, W. L., S. Sillett, B. Flint, M. Naughton, C. S. Robbins, M. Gustafson, and P. Pyle.  2006. Demographic parameter estimates of North Pacific albatross and implications for future data collection. Atoll Research Bulletin 543:173-179

25. *Conn, P. B., P. F. Doherty, Jr., and J. D. Nichols.  2005. Comparative demography of new world populations of thrushes (Turdus spp.): Comment. Ecology 86:2536-2541.

24. Ball, L. C., P. F. Doherty, Jr., and M. W. McDonald. 2005. An occupancy modeling approach to evaluating a Palm Springs ground squirrel habitat model. Journal of Wildlife Management 69:894-904.

23. Baillie, S. R. and P. F. Doherty. 2004. Analysis using large-scale ringing data. Animal Biodiversity and Conservation 27:371-373.

22. Schreiber, E. A., P.F. Doherty, and G. A. Schenk. 2004. Dispersal and survival rates of adult and juvenile Red-tailed tropicbirds (Phaethon rubricauda) exposed to potential contaminants. Animal Biodiversity and Conservation 27:531-540.

21. Feare, C. J., and P. F. Doherty, Jr. 2004. Survival estimates of adult Sooty Terns from Bird Island, Seychelles. Ibis 146:475-480.

20. Doherty, P. F., Jr., E. A. Schreiber, J. D. Nichols, J. E. Hines, W. A. Link, G. A. Schenk, and R. W. Schreiber. 2004. Testing life history predictions in a long-lived seabird: a population matrix approach with improved parameter estimation. Oikos 105:606-618.

19. Beadell, J. S., E. A. Schreiber, R. W. Schreiber, G. A. Schenk, and P. F. Doherty. 2003. Survival of Brown Boobies (Sula leucogaster) at Johnston Atoll: A long-term study. Auk 120:811-817.

18. Doherty, P. F., Jr., G. Sorci, J. A. Royle, J. E. Hines, J. D. Nichols, and T. Boulinier. 2003. Sexual selection affects local extinction and turnover in bird communities. Proceedings of the National Academy of Sciences of the United States of America 100:5858–5862. (Highlighted in PNAS 100(10):5576-5577).

17. Doherty, P. F., Jr., T. Boulinier, and J. D. Nichols. 2003. Local extinction and turnover rates at the edge and interior of species’ ranges. Annales Zoologici Fennici 40:145-153.

16. Doherty, P. F., Jr. and T. C. Grubb, Jr. 2003. Relationship of nutritional condition of permanent-resident woodland birds with woodlot area, supplemental food, and snow cover. Auk 120:331-336.

15. Link, W.A. and P. F. Doherty, Jr. 2002. Scaling in sensitivity analysis. Ecology 83:3299–3305.

14. Doherty, P.F., Jr., J.D. Nichols, J. Tautin,  J.V.Voelzer, G.W. Smith, D.S. Benning, J.K. Bidwell, K. Bollinger, A.R. Brazda, E.K. Buelna, C.F. Ferguson, J.R. Goldsberry, F.H. Roetker, J.W. Solberg, P.P. Thorpe, and J.S. Wortham. 2002. Sources of variation in breeding-ground fidelity of mallard ducks.  Behavioral Ecology 13:543-550.

13. Doherty, P.F., Jr. and T.C. Grubb, Jr. 2002. Survivorship of permanent-resident birds in a fragmented forested landscape. Ecology 83:844-857.

12. Doherty, P.F., Jr. and T.C. Grubb, Jr. 2002. Nest usurpation is an ‘edge effect’ for Carolina Chickadees (Poecile carolinensis). Journal of Avian Biology 33:77-82.

11. Schreiber, E.A., G.A. Schenk, and P.F. Doherty, Jr. 2001. Effects of the Johnston Atoll Chemical Agent Disposal System (JACADS) on the survival, movement and reproductive success of red-tailed tropicbirds.  Journal of Wildlife Management 65:685-695.

10. Doherty, P.F., Jr., J.B. Williams, and T.C. Grubb, Jr. 2001. Field metabolism and water flux of Carolina chickadees during the breeding and non-breeding season. Condor: 103:370-375.

9. Doherty, P.F., Jr. and T.C. Grubb, Jr.  2000.  Seasonal, habitat, and landscape correlates of abundances, density and diversity of birds wintering in fragments of temperate-deciduous woodland. Wilson Bulletin 112:389-395.

8. Pravosudov, V., T.C. Grubb, Jr. P.F. Doherty, Jr., C.L. Bronson, E.V. Pravosudova, and A.S. Dolby.  1999.  Social dominance and energy reserves in wintering woodland birds.  Condor 101:880-884.

7. Doherty, P.F., Jr., E.A. Marschall and T.C. Grubb, Jr. 1999. A dynamic programming approach to optimizing the balance between conservation and economic gain.  Ecological Economics 29:349-358.

6. Pravosudova E.V., T.C. Grubb, Jr., P.G. Parker, and P.F. Doherty, Jr.  1999.  Patch size and composition of social groups in wintering Tufted Titmice (Baeolophus bicolor). Auk 116:1152-1155.

5. Grubb, T.C., Jr., and P.F. Doherty, Jr. 1999. On home-range gap-crossing. Auk 116:618-629.

4. Doherty, P.F., Jr. and T.C. Grubb, Jr., 1998. Reduced reproductive success of tree swallows breeding under high-voltage powerlines. American Midland Naturalist 140:122-128.

3. Doherty, P.F., Jr., T.C. Grubb, Jr. and C.L. Bronson. 1996.  Territories and caching related behavior of Red-headed Woodpeckers wintering in a beech grove.  Wilson Bulletin 108:740:747.

2. Doherty, P.F., Jr. and T.C. Grubb, Jr. 1996. Effects of high-voltage powerlines on birds breeding within the powerlines’ electromagnetic field. Sialia 18:129-134.

1. Doherty, P.F., Jr. and J.M. Condit. 1994. Carolina Chickadee lays and incubates eggs in two separate nest cups within the same nest box. Wilson Bulletin 106:569-571.