MARK Program Help File Index
- .inp File Extension
- .Rinp
- -2log(L)
- Add Column
- Add Multiple Columns
- Add One Column
- Additive Models
- Adjust Model Name
- Adjust Number of Parameters
- Adjust Number Parameters
- Adjustments
- Adjust Number Parameters
- Change Model Name
- CHat
- Font Size
- c-hat
- Font Size
- Model Name
- Number of Parameters
- Age Matrix
- Age PIM
- AIC
- AICc
- AICc Weight
- Akaike Weight
- Akaike’s Information Criterion
- All Different Matrices
- All Possible Models
- Analysis of Deviance
- Analysis Theory
- ANODEV
- Append DBF
- Append Model
- Append Models
- Averaging
- Background
- Band Reporting Rate
- Barker Joint Live and Dean Encounters
- Barker Model
- Barker Model Parameterizations
- Batch Run Facility
- Bayesian Estimation
- Beta Parameter Estimates Variance Components
- Beta Parameter Labels
- Beta Parameters
- Beta VC Matrix
- BIC
- Bootstrap
- Bootstrap Data
- Bootstrap Goodness-of-Fit Procedure
- Bootstrap Options
- BROWNIE Program
- Bugs in MARK
- Burnham Joint Live and Dead Encounters
- Burnham Jolly-Seber Model
- CAPTURE Program
- CAPTURE Simulations
- CDX File
- Change Data Type
- Change Model Name
- Change PIM Definitions
- chat
- c-hat
- Chi-Square Probability
- chi-squared
- Clipboard
- CLogit Link
- Closed Captures
- Closed Captures Full Heterogeneity
- Closed Captures Heterogeneity
- Closed Captures Models
- Closed Captures with mis-identification
- Closed Robust-design Multi-strata Model
- Closure Assumption
- Cluster Sampling
- Colonization
- Column Heading
- Design Matrix Labels
- Design Matrix
- Complementary Log-log Link
- Confidence Intervals
- Constant Matrix
- Continuous Group Effect
- Continuous Occasion Effect
- Continuous Variable
- Copy Estimates Clipboard
- Copy Matrix
- Copy Multiple Columns
- Copy One Column
- Copy PIM to Clipboard
- Copy Value
- Cormack-Jolly-Seber
- Cormack-Jolly-Seber Model
- Cormack-Jolly-Seber Simulations
- Covariates
- Design Matrix Scaling Covariates
- Individual
- scaling in design matrix
- Crashes
- Current Model
- Data Cloning
- Data Replace
- Data Summary
- Data Type
- Barker Model Parameterizations
- Barker Model
- Data Type
- Heterogeneity Closed Captures Mh
- Heterogeneity Closed Captures Mtbh
- Heterogeneity Closed Captures
- Heterogeneity Open Models
- Huggins Models
- Initial Values
- Known Fate
- Mixtures
- Multi-State Models with Live and Dead Encounters
- Nest Survival
- Pledger Mixture Models
- Data Type Change
- Data Types
- Database
- Results Browser
- Results File
- Results Browser
- Results File
- DBF File
- Dead Encounters
- Dead Recoveries
- Default
- Design Matrix Default
- Design Matrix
- Default Covariate Labels
- Default Covariate Names
- Default Group Labels
- Default Group Names
- Delete Columns
- Delete Model
- Delete Multiple Columns
- Delete One Column
- Delta AICc
- Delta QAICc
- Denominator DF
- Density Estimation
- Density using telemetry
- Derived Estimates
- Derived Parameters
- Derived VC Matrix
- Design Matrix
- Add Column
- Add Multiple Columns
- Add One Column
- Column Modification
- Column Number
- Continuous Group Effect
- Continuous Occasion Effect
- Copy Multiple Columns
- Copy One Column
- Copy Value
- Covariate Names
- Delete Columns
- Delete Multiple Columns
- Delete One Column
- Design Matrix Continuous Variable
- Design Matrix Default
- Design Matrix
- Discrete Group Effect
- First Column Number
- Font Size
- Identity Design Matrix
- Individual Covariates
- Insert Multiple Columns
- Insert One Column
- Intercept
- Multiply Columns
- Partial Continuous Group Effect
- Partial Continuous Occasion Effect
- Partial Continuous
- Partial Discrete Group Effect
- Partial Discrete Occasion Effect
- Partial Identity
- Partial Intercept
- Paste Clipboard Design Matrix
- Product of Columns
- Rotate Column
- Save Design Matrix
- Second Column Number
- Zero Columns
- Zero Multiple Columns
- Zero One Column
- Zero Partial Column
- Add Multiple Columns
- Add One Column
- Cell Size
- Colors
- Continuous Group Effect
- Continuous Occasion Effect
- Copy Multiple Columns
- Copy One Column
- Copy Value
- Default
- Delete Columns
- Delete Multiple Columns
- Delete One Column
- Discrete Group Effect
- Functions
- Identity
- Individual Covariate Plot
- Individual Covariates
- Individual Covariates and Real Estimates
- Individual Covariates Missing Values
- Insert Multiple Columns
- Insert One Column
- Intercept
- Labels
- Multiply Columns
- Partial Continuous
- Partial Continuous Group Effect
- Partial Continuous Occasion Effect
- Partial Discrete Group Effect
- Partial Discrete Occasion Effect
- Partial Identity
- Partial Intercept
- Paste Clipboard
- Product of Columns
- Reorder Columns
- Retrieve Columns
- Rotate Column
- Saving
- Scaling Covariates
- Second Column Number
- Zero Columns
- Zero Multiple Columns
- Zero One Column
- Zero Partial Column
- Design Matrix Add and Product Functions
- Design Matrix Advanced
- Design Matrix Advanced 2
- Design Matrix Cell Size
- Design Matrix Colors
- Design Matrix Column Headings
- Design Matrix Commands
- Design Matrix Continuous Variable
- Design Matrix Default
- Design Matrix Functions
- Design Matrix Labels
- Design Matrix Reorder Columns
- Design Matrix Retrieve Columns
- Design Matrix Scaling Covariates
- Deviance
- Deviance Analysis
- Devices
- Diagonal Modification
- Diagonal Number
- Diagonal Start Parameter Value
- Discrete Group Effect
- Discrete Occasion Effect
- Dummy Variables from Individual Covariates
- Duration Times
- Duration Times
- Residence Times
- Effective Sample Size
- Encounter Histories
- Encounter Histories File
- Encounter Histories File Name
- Encounter Histories Format
- Encounter Histories Summary
- Encounter Occasions
- Estimability
- Estimable Parameters
- ESTIMATE Program
- Estimation Window
- Exchange Matrices
- Exit
- Extinction
- Extra Binomial Variation
- F Probability
- F Statistic
- F Statistic Value
- F Test
- File Dialog Window
- File Models
- File New
- File Notes
- File Open
- File Preferences
- File Resize
- File View
- Files
- Encounter Histories File
- File New
- File Open
- File Resize
- File View
- Temporary Files
- Encounter History
- Results
- Temporary
- First Column Number
- Fix Parameters
- Fixed Parameters
- Fletcher chat
- Font Size
- FPT File
- Full Design Matrix
- Function Evaluations
- Functions of Individual Covariates
- Gauss-Hermite
- Getting Started
- GIBBSIT
- Global Model
- Goodness-of-Fit
- Graphics
- Graphics Window
- Group Labels
- Group Names
- Help
- Help Button
- Help Index
- Optimization Exercise
- Button
- Index
- Numerical Optimization
- Help Button
- Help Command
- Help Index
- HelpIndex
- Hessian Matrix
- Hetergeneity Closed Captures Mtbh
- Heterogeneity
- Heterogeneity Closed Captures
- Heterogeneity Closed Captures Mh
- Huggins Closed Captures
- Huggins Models
- Idenity Design Matrix
- identifiability
- Identifiable Parameters
- Identity
- Identity Design Matrix
- Identity Link
- IndCovar
- Indicator Functions from Individual Covariates
- Individual Covariate Functions
- Individual Covariate Names
- Individual Covariate Plot
- Individual Covariates
- Individual Covariates — Missing Values
- Individual Covariates and Real Estimates
- individual random effects
- Initial Estimates
- Initial Parameter Estimates
- Initial Values for New Analysis
- Initial Values
- Data Type
- Encounter Histories File Name
- Group Labels
- Number of Encounter Occasions
- Number of Groups
- Number of Individual Covariates
- Number of Mixtures
- Number of Strata
- Results File Name
- Strata Labels
- Strata Names
- Time Intervals
- Title
- Input Data
- Input Data Summary
- Input Files
- Insert Multiple Columns
- Insert One Column
- Interactions (* models)
- Intercept
- Joint Live-Dead Encounters
- Jolly-Seber Model
- K
- Kaplan-Meier Estimation
- Known Fate
- Known Problems
- Labels
- Design Matrix Labels
- State Labels
- Beta Parameters
- Design Matrix
- Real Parameters
- State Labels
- LaserLst
- Likelihood
- Likelihood Ratio Tests
- Limits
- Link Function
- Link Functions
- Link-Barker
- List Data
- Literature Cited
- Live Encounters
- Live Recaptures
- Live-dead Encounters
- log Likelihood
- Log Link
- Logarithms
- Logit Link
- Log-log Link
- LR Model Select
- Lukacs Model
- Lukacs young survival marked adults
- Markov Chain Monte Carlo
- Mark-Resight Data Types
- Mark-Resight Mixed Logit-Normal
- Mark-Resight Poisson Log-normal
- Matrix to Copy
- Matrix to Copy or Exchange
- Matrix to Exchange
- Maximum Age
- MCMC
- MCMC
- Binary File
- Burn In
- CSV File
- Design Matrix
- Diagnostics
- Hyperdistributions
- Posterior Distributions
- Prior Distributions
- R Code
- Samples
- SAS Code
- Step Size
- Summary CSV File
- Tuning
- VC Matrix
- MCMC Binary File
- MCMC Burn In
- MCMC CSV File
- MCMC Design Matrix
- MCMC Diagnostics
- MCMC Hyperdistributions
- MCMC Prior Distributions
- MCMC R code
- MCMC Random Seed
- MCMC Samples
- MCMC SAS code
- MCMC Step Size
- MCMC Summary CSV File
- MCMC Tuning
- MCMC VCMatrix
- Median chat
- Memory Requirements
- Missing Values in Individual Covariates
- Mixture Distributions
- Mixture Models
- Mixtures Models
- MLogit Link
- Model
- Delete Model
- Undelete Model
- Change Data Type
- Data Type
- Delete
- Name
- Notes
- Structure
- Undelete
- Model Averaging
- Model Likelihood
- Model Name
- Model Notes
- Model Selection
- Model Structure
- Model Structure
- Retrieve Model
- Retrieve Model from File
- Save Structure
- Model Weight
- Multiple Models
- Multiple States
- Multiply Columns
- Multi-scale
- Multi-State Models
- Multi-Strata Models
- Multi-Strata Models with Live and Dead Encounters
- n-ess
- Nest Success
- Nest Survival
- NotePad Window
- Number of Encounter Occasions
- Number of Estimated Parameters
- Number of Groups
- Number of Individual Covariates
- Number of Occasions
- Number of Parameters
- Number of Parameters Closed Captures
- Number of Parameters Cormack-Jolly-Seber
- Number of Parameters Estimated
- Number of Parameters Live Encounters
- Number of Parameters S f Dead Recoveries
- Number of Parameters S r Dead Recoveries
- Number of Parameters Seber Dead Recoveries
- Number of Strata
- Number of Threads
- Number Parameters
- Number Parameters Brownie Dead Recoveries
- Number Parameters Cormack-Jolly-Seber
- Number Parameters Live Encounters
- Number Parameters S f Dead Recoveries
- Number Parameters S r Dead Recoveries
- Numerator DF
- Numerical Optimization
- Occasions
- Occupancy
- Number Devices
- Occupancy Estimation Multiple States Robust Design Conditional Binomial
- Occupancy Estimation Multiple States Robust Design General
- Occupancy Estimation Multiple States Single Season
- Occupancy Estimation Multi-scale
- Occupancy Estimation Robust Design 2 Species
- Occupancy Estimation Robust Design
- Occupancy Estimation Two Species
- Occupancy Royle Counts
- Occupany Royle/Nichols
- Occupancy Estimation
- Occupancy Estimation Multiple States Robust Design Conditional Binomial
- Occupancy Estimation Multiple States Robust Design General
- Occupancy Estimation Multiple States Single Season
- Occupancy Estimation Multi-scale
- Occupancy Estimation Robust Design 2 Species
- Occupancy Estimation Robust Design
- Occupancy Estimation Two Species
- Occupancy Estimation with Correlated Detections
- Occupancy Estimation with Relaxed Closure Assumption
- Occupancy Estimation
- Occupancy Royle Counts
- Occupany Royle/Nichols
- Occupancy Estimation Multiple States
- Occupancy Estimation Multi-scale
- Occupancy Estimation Robust Design
- Occupancy Estimation Robust Design Two Species
- Occupancy Estimation Two Species
- Occupancy Royle Counts
- Occupany Royle/Nichols
- OK
- OK Button
- OK Run Window
- Open PIM
- Open Robust Design Multi-state
- Open Robust-design Multi-Strata Model
- Optimization Exercise
- Optimization Method
- Outlier Identification
- Overdispersion
- Parallel Processing
- Parameter Entry Box
- Parameter Estimates
- Parameter Estimates Variance Components
- Parameter Estimation
- Parameter Index Matrices
- Change PIM Definitions
- Parameter Matrices
- Age Matrix
- All Different Matrix
- Change Column
- Change Diagonal
- Change Row
- Chart
- Constant Matrix
- Copy Matrix
- Copy PIM to Clipboard
- Decrement
- Entry Box
- Exchange Matrices
- Increment
- Maximum Age
- Number of Diagonal
- Open
- Paste Clipboard
- Renumber No Overlap
- Renumber With Overlap
- Time and Age Matrix
- Time Matrix
- Parameter Index Matrix
- Parameter Matrices
- Age Matrix
- All Different Matrix
- Change Column
- Change Diagonal
- Change Row
- Chart
- Constant Matrix
- Copy Matrix
- Copy PIM to Clipboard
- Decrement
- Entry Box
- Exchange Matrices
- Increment
- Maximum Age
- Number of Diagonal
- Open
- Paste Clipboard
- Renumber No Overlap
- Renumber With Overlap
- Time and Age Matrix
- Time Matrix
- Parameter Indices Variance Components
- Parameter Initial Estimates
- Parameter Initial Values
- Parameter Matrices
- Age Matrix
- All Different Matrix
- Column Modification
- Constant Matrix
- Diagonal Modification
- Diagonal Number
- Exchange Matrices
- Matrix to Copy or Exchange
- Matrix to Copy
- Matrix to Exchange
- Maximum Age
- Open PIM
- Parameter Entry Box
- Parameter Matrices
- Paste Clipboard into PIM
- PIM Chart
- PIM Decrement
- PIM Increment
- Renumber No Overlap
- Renumber Overlap
- Row Modification
- Time and Age Matrix
- Time Matrix
- Parameter Matrix
- Parameter Plots
- Parameter Plots Add Series
- Parameter Plots Parameter List
- paramter heterogeneity
- Parmeter Estimates
- Parm-specific Link
- Partial Continuous
- Partial Continuous Group Effect
- Partial Continuous Occasion Effect
- Partial Derivatives
- Partial Discrete Group Effect
- Partial Discrete Occasion Effect
- Partial Identity
- Partial Intercept
- Paste Clipboard
- Paste Clipboard into PIM
- Pearson
- Penalty on Likelihood Function
- PIM
- Parameter Matrices
- Age Matrix
- All Different Matrix
- Change Column
- Change Diagonal
- Change Row
- Chart
- Constant Matrix
- Copy Matrix
- Copy Matrix to Clipboard
- Decrement
- Entry Box
- Exchange Matrices
- Increment
- Maximum Age
- Number of Diagonal
- Open
- Paste Clipboard
- Renumber No Overlap
- Renumber With Overlap
- Time and Age Matrix
- Time Matrix
- PIM Chart
- PIM Decrement
- PIM Definitions
- PIM Increment
- PIM Window
- Pledger mixtures
- Pledger Model
- POPAN Model
- Population Rate of Change
- Power functions
- Pradel
- Pradel Model
- Pradel Models
- Pre-Defined Models
- Preferences
- Printing Output
- Probability
- Product of Columns
- Profile Likelihood Confidence Intervals
- Program BROWNIE
- Program CAPTURE
- Program Crashes
- Program ESTIMATE
- Program Options
- Program RELEASE
- Program Stability
- Provide Initial Estimates
- Provide Initial Values
- QAIC
- QAICc
- QAICc Weight
- Quasi-likelihood
- Quasi-Likelihood Parameter
- R Code
- Radio Telemetry Survival Estimation
- random effects
- Real Estimates
- Real Parameter Estimates and Individual Covariate Values
- Real Parameter Estimates Variance Components
- Real Parameter Labels
- Real Parameters
- Real VC Matrix
- Recaptures Only
- Recoveries Only
- Recoveries Without Knowing Number Marked
- Recruitment Parameters
- Reduced Design Matrix
- Re-encounter Occasions
- References
- ReGenerate Real Derived Model(s)
- Relation to Other Programs
- RELEASE
- RELEASE Program
- RELEASE Simulations
- Removal Models
- Renumber No Overlap
- Renumber Overlap
- Replace Data
- ReRun Model(s)
- Residence Times
- Residuals Plot
- Results Browser
- Results File
- Results Window
- Retrieve Columns from Design Matrix
- Retrieve Current Model
- Retrieve Model from File
- R-hat
- Ring Reporting Rate
- RMARK
- RMARK File Import
- Robust Design
- Robust Design Barker
- Robust Design Barker Model
- Robust Design Huggins
- Robust Design Model
- Robust Design Multi-State Model
- Robust Design Multi-State with State Uncertainty
- Robust Design Occupancy Estimation
- Rotate Column
- Row Modification
- Run Current Model
- Run File Models
- Run Model
- Run Models
- Run Title
- Run Window
- Fix Parameters
- Function Evaluations
- Initial Estimates
- List Data
- MCMC
- Model Name
- Optimization Method
- Penalty on Likelihood Function
- Profile Likelihood Confidence Intervals
- Run Current Model
- Run Title
- Run Window
- Save Model Structure
- Set Number Parameters
- Significant Digits
- Standardize Individual Covariates
- Variance Estimation
- Saturated Model
- Save Design Matrix
- Save Model Structure
- Saved Models
- Save Model Structure
- Running Later
- Scaling covariates in design matrix
- Scaling Individual Covariates
- Second Column Number
- Select All Models
- Set Number Parameters
- Set Preferences
- Set Time Intervals
- Significant Digits
- Simulated Annealing
- Simulation
- Simulation Beta Values True Model
- Simulation Estimation Model Specification
- Simulation Individual Covariates
- Simulation Model Specification
- Simulation of Robust Design Models
- Simulation Release Numbers
- Simulation Required Tasks
- Simulation True Model Specification
- Simulations
- Sin Link
- Software
- Species Interactions
- Stability of Program
- Standardize Individual Covariates
- Starting Estimates
- Starting Values
- Statistical Theory
- Strata
- Strata Labels
- Strata Names
- Strength of Evidence
- Subset Models
- Temporary Files
- Theory
- Threads
- Time and Age Matrix
- Time Intervals
- Time Matrix
- Time Stamp
- Transients
- Transition Probabilities in Multi-strata Models
- Undelete Model
- Variance Components
- Variance Components Design Matrix
- Variance Components Parameter Indices
- Variance Estimation
- Variance-Covariance Matrix
- Weight
- AICc Weight
- BIC
- AIC
- BIC
- Model
- Window
- Estimation Window
- File Dialog Window
- NotePad Window
- Results Browser
- Design Matrix
- Estimation
- File Dialog
- NotePad
- Results Browser
- Window Cascade
- Window Tile
- Windows
- Young Survival
- Zero Columns
- Zero Multiple Columns
- Zero One Column
- Zero Partial Column